Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,009,731 – 6,009,827 |
Length | 96 |
Max. P | 0.857022 |
Location | 6,009,731 – 6,009,827 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.35 |
Mean single sequence MFE | -33.31 |
Consensus MFE | -27.00 |
Energy contribution | -27.58 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.12 |
Mean z-score | -2.68 |
Structure conservation index | 0.81 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6009731 96 - 22407834 GCUGCCGUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACACCGGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAACAACUACA ((((...(((.....))).))))(((((..((((........(((....))).(((((((.......))))))).))))..))))).......... ( -34.30) >DroSec_CAF1 65775 96 - 1 GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACCCCAGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA (((((..(((.....))).....(((((..((((.........((....))..(((((((.......))))))).))))..))))).))))).... ( -32.00) >DroSim_CAF1 66421 96 - 1 GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACCCCAGCCCAGGCCAUGUUGGUCACCAAUAUCAACAAGCUUCAGGAGCAGCAGCUGCA (((((..(((.....))).....(((((..((((.........((....))..(((((((.......))))))).))))..))))).))))).... ( -31.90) >DroEre_CAF1 70567 96 - 1 GCUGCCCUGCAAGAAGCAACAGCGUUCCCAGAGCCUGACACCGGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA ((((((((....(((((..(((.((((...))))))).....(((....))).(((((((.......))))))).)))))))).)))))....... ( -35.30) >DroYak_CAF1 70193 96 - 1 GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGUCUCACACCAGCGCAGGCCAUGUUGGUGAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA ((((((((....(((((....(((((................)))))......((((((((.....)))))))).)))))))).)))))....... ( -34.29) >DroMoj_CAF1 91719 96 - 1 GCUGCCCUGCAAGAAGCAGCAACGCUCACAGAGCUUAACACCUGCCCAGGCGAUGGUGGUGUGCAACAUUAACAAGCAACAGGAGCAGCAGCAACA (((((.((((.....))))....((((.....((((..(((((((....)))..))))(((.....)))....)))).....)))).))))).... ( -32.10) >consensus GCUGCCCUGCAAGAAGCAACAGCGCUCCCAGAGCCUCACACCAGCCCAGGCCAUGUUGGUCAGCAACAUCAACAAGCUUCAGGAGCAGCAGCUGCA (((((..(((.....))).....(((((..((((.........((....))..(((((((.......))))))).))))..))))).))))).... (-27.00 = -27.58 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:27 2006