Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,004,890 – 6,004,993 |
Length | 103 |
Max. P | 0.843628 |
Location | 6,004,890 – 6,004,993 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -26.18 |
Consensus MFE | -13.46 |
Energy contribution | -15.74 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.11 |
Structure conservation index | 0.51 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6004890 103 - 22407834 UACGGGGUA--UAAGGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA------GAAGUUUGAAGAGAUUA--UCUUGUAAUCUUAACAUAGAGAGAGAUUUU (((((((((--....(((((((((((((((((.((.....)).))))))(((.....)------))..)))))))))))))--))))))).((((......))))........ ( -26.90) >DroSec_CAF1 61039 105 - 1 UACGGGGUA--UAAGGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA------GAAAUUCGAAGAGAUUAUAUCUUGUAAUCAAUACAUAGAAAGAGAUUUU (((((((((--((..((((((((...((((((.((.....)).))))))(((.....)------)).....)))))))))))))))))))....................... ( -26.20) >DroSim_CAF1 61670 107 - 1 UACGGGGUAUAUAACGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA------GAAAUCCGAAGAGAUUAUAUCUUGUAAUCAAUACAUAGAGAAAGAUUUU (((((((((((....((((((((..(((((((.((.....)).)))))))......((------....)).)))))))))))))))))))....................... ( -27.00) >DroEre_CAF1 66144 99 - 1 UA-----------AGGUUACUUCGAAACCGGUUUCGGCCUGAUUUCGGUUCUACCUGAAAUUGUGAAAUUCGAAGAGAUUA--UCUUGUAAACUAUACAUAGAUA-AGAUUUU .(-----------(((((.(((((((...(((....))).((((((((......))))))))......)))))))...(((--(((((((.....)))).)))))-))))))) ( -23.20) >DroYak_CAF1 65336 100 - 1 UACGGUGUA--GAAGAUUACUUCGAAACCGGUUUCGGGAUGAUUUCGGUUCUACCUGAAGUUAAGAAAUUCGAAGGGAUAA--UCUUGUAAGCUAUUCAG---------UAUU ...(((.((--.((((((((((((((.(((....)))..(((((((((......))))))))).....)))))))...)))--)))).)).)))......---------.... ( -27.60) >consensus UACGGGGUA__UAAGGUUUCUUCAAAACCGGUUUCGGUAUGAUAUCGGUUCUACCUGA______GAAAUUCGAAGAGAUUA__UCUUGUAAUCUAUACAUAGAGA_AGAUUUU (((((((........(((((((((((((((((.((.....)).))))))((.....))..........)))))))))))....)))))))....................... (-13.46 = -15.74 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:26 2006