Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,994,999 – 5,995,105 |
Length | 106 |
Max. P | 0.593937 |
Location | 5,994,999 – 5,995,105 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -24.94 |
Consensus MFE | -17.92 |
Energy contribution | -17.67 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.23 |
Mean z-score | -1.07 |
Structure conservation index | 0.72 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5994999 106 - 22407834 AAUGCUGCUUUGCGAUGGCUGCGACGACAGCUACCACACCUUUUGCCUGUUGCCGCCUCUGACCAGCAUACCCAAAGGUAAAAUUCUUAUCAAAAAGU-UUCUAACA .((((((.((...((.(((.((((((...((.............)).)))))).))))).)).)))))).......(((((.....))))).......-........ ( -22.62) >DroVir_CAF1 75723 106 - 1 CAUGCUGCUCUGUGACGGUUGCGACGAUAGCUAUCAUACCUUCUGCUUGUUGCCACCACUGAGCAGCAUACCAAAAGGUGAGUUUCAUUUCGUCAAUA-UACUCACU .(((((((((.((...(((.((((((..(((.............))))))))).))))).))))))))).......(((((((...............-.))))))) ( -35.01) >DroPse_CAF1 78812 96 - 1 GAUGCUUCUGUGCGAUGGCUGCGACGACAGCUACCACACGUUCUGUCUGCUGCCGCCCUUGACCAGCAUACCCAAAGGUAAGA-------CAACAACC-CCCUA--- .........(((.(.((((((......)))))).).)))(((.(((((((((...........)))).((((....)))))))-------))..))).-.....--- ( -23.10) >DroSec_CAF1 51107 103 - 1 UAUGCUGCUUUGCGAUGGCUGCGACGACAGCUACCACACCUUCUGCCUGUUGCCGCCUCUGACCAGCAUACCCAAAGGUAAUAGUCUUUUCAAAAAUU-UCCUA--- ..(((((.((...((.(((.((((((.(((............)))..)))))).))))).)).)))))((((....))))..................-.....--- ( -22.60) >DroYak_CAF1 55281 104 - 1 UAUGCUGCUGUGCGAUGGCUGCGACGACAGCUACCACACCUUUUGCCUGUUGCCGCCUCUGACCAGUAUACCCAAAGGUAAUAUUCUAUACACUUAGUUUACUA--- (((((((..((.((..(((.((((((...((.............)).)))))).)))..)))))))))))......(((((....(((......))).))))).--- ( -23.22) >DroPer_CAF1 78834 96 - 1 GAUGCUUCUGUGCGAUGGCUGCGACGACAGCUACCACACGUUCUGUCUGCUGCCGCCCUUGACCAGCAUACCCAAAGGUAAGA-------CAACAACC-CCCUA--- .........(((.(.((((((......)))))).).)))(((.(((((((((...........)))).((((....)))))))-------))..))).-.....--- ( -23.10) >consensus GAUGCUGCUGUGCGAUGGCUGCGACGACAGCUACCACACCUUCUGCCUGUUGCCGCCUCUGACCAGCAUACCCAAAGGUAAGAUUCUUUUCAACAACU_UCCUA___ ..(((((.....((..(((.((((((...((.............)).)))))).)))..))..)))))((((....))))........................... (-17.92 = -17.67 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:25 2006