Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 631,971 – 632,070 |
Length | 99 |
Max. P | 0.768304 |
Location | 631,971 – 632,070 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.91 |
Mean single sequence MFE | -38.82 |
Consensus MFE | -21.83 |
Energy contribution | -23.64 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.56 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 631971 99 + 22407834 CGUAAAGGUGCGAAAACAUC-CAUUUGCGCUUUGGGGU---AAUCGA----------------AGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA-ACCGUCCGUUGGCCAAUGGGCGU ..(((((((((((...((..-....))((((((((...---..))))----------------)))).))).))))))))..(.((((((((((.(-((.....)))))))))))))).. ( -35.50) >DroPse_CAF1 33408 119 + 1 CGUAAAGGUGCCAAGUGUAGAGGACUGGGCCUGGAGGGCCCCAUCAUAAGCCGCU-CAAUCUCAGCGAUUGUCGCUUUUAAACUCCCAUUGGCUCGGACCCACCUUUGGCCACUGGGCGU (((...(((((((((.((.(.((.(((((((.(((((((..........)))((.-(((((.....)))))..)).......))))....))))))).))))).))))).))))..))). ( -42.90) >DroSec_CAF1 20910 115 + 1 CGUAAAGGUGCGAAAACAUC-CAUUUGCGCUUUGGGGU---AAUCGAGAUUCCCUCUAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA-ACCGUCCGUUGGCCAAUGGGCGU ....((((((((((......-..))))))))))((((.---(((....))))))).......(((((.....))))).....(.((((((((((.(-((.....)))))))))))))).. ( -38.60) >DroSim_CAF1 20660 115 + 1 CGUAAAGGUGCGAAAACAUC-CAUUUGCGCUUUGGGGU---AAUCGAGAUUCCCUCUAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCUUUGUCUUA-ACCGUCCGUUGGCCAAUGGGCGU ....((((((((((......-..))))))))))((((.---....(((.....)))......(((((.....)))))......)))).........-..((((((((....)))))))). ( -32.00) >DroEre_CAF1 24982 115 + 1 CGUAAAGGUGCGAAAACUUC-AAUUUGUGCUUUGGGGU---AUUCGAAGUACCCUCUAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA-ACCGUCGUUUGGCCAAUGGGCGU ....((((..((((......-..))))..))))(((((---((.....))))))).......(((((.....))))).....(.((((((((((.(-((....))).))))))))))).. ( -41.00) >DroPer_CAF1 34805 119 + 1 CGUAAAGGUGCCAAGUGUAGAGGACUGGGCCUGGAGGGCCCCAUCAUAAGCCGCU-CAAUCUCAGCGAUUGUCGCUUUUAAACUCCCAUUGGCUCGGACCCACCUUUGGCCACUGGGCGU (((...(((((((((.((.(.((.(((((((.(((((((..........)))((.-(((((.....)))))..)).......))))....))))))).))))).))))).))))..))). ( -42.90) >consensus CGUAAAGGUGCGAAAACAUC_CAUUUGCGCUUUGGGGU___AAUCGAAAUCCCCU_UAAUUUGAGCGAUUGUCGCUUUUAAAGUCCCAUUGGCUUA_ACCGUCCGUUGGCCAAUGGGCGU (.(.((((((((((.........)))))))))).).)..........................((((.....))))........((((((((((.............))))))))))... (-21.83 = -23.64 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:27 2006