Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,983,996 – 5,984,115 |
Length | 119 |
Max. P | 0.735236 |
Location | 5,983,996 – 5,984,115 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.93 |
Mean single sequence MFE | -36.66 |
Consensus MFE | -29.87 |
Energy contribution | -28.85 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.81 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.735236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5983996 119 + 22407834 AAU-CUCCUCCGUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGAGCAUUCGCGAGUGCCAGGCGCUGAUCCUGGCCCCCACUCGCGAGUUGGCCA ...-......(((.(((..(((((....)))))..)))(((((((((.......))).)))))).))).((((((((((((((((((.......))))))....))))))))))..)).. ( -42.20) >DroVir_CAF1 61299 118 + 1 GGUCAU--UUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUCCUUCAGCAAAUCGACACGUCCAUGCGCGAAUGUCAGGCUUUGAUCCUGGCACCAACUCGCGAAUUGGCCA (((((.--((((((((.(((((((....))))).....((((((((.........)).))))))...)))).)))((((.(((((((.......))))))).....))))))).))))). ( -37.00) >DroGri_CAF1 49563 120 + 1 GUUUGUUUGUUUUAGGUACUGGCAAAACUGCCACCUUUUCGAUUGCCAUCCUUCAGCAAAUCGAUACGGCCGUUCGUGAAUGCCAGGCUCUGAUCUUGGCCCCCACUCGCGAGUUGGCUA (((.(((((((..(((...((((((.................)))))).)))..))))))).)))..((((..((((((.((...((((........))))..)).))))))...)))). ( -34.13) >DroWil_CAF1 66290 117 + 1 UAU-A--UUUAACAGGUACUGGCAAAACUGCCACCUUCUCGAUUGCCAUUCUGCAGCAAAUCGACACGACAAGUCGCGAAUGUCAGGCUCUGAUUUUGGCACCAACUCGUGAAUUGGCCA ...-.--.......(((..(((((....))))).....((((((((.........)).))))))(((((...((.((.((.(((((...))))).)).))))....))))).....))). ( -28.50) >DroMoj_CAF1 57771 119 + 1 GCU-AUCGCUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUACUUCAGCAAAUCGACACGUCCAUUCGCGAAUGCCAAGCUUUGAUCUUGGCACCCACUCGCGAGUUGGCCA ...-...(((.(.(((((.((((((.................)))))))))))))))..........(((.((((((((.(((((((.......))))))).....)))))))).))).. ( -35.83) >DroAna_CAF1 41629 119 + 1 AUU-UACUUUCACAGGAACUGGCAAGACUGCCACCUUCUCGAUCGCCAUCCUUCAGCAGAUCGACACGUCCAUUCGCGAGUGCCAGGCUCUGAUCCUGGCCCCAACUCGCGAGCUGGCCA ...-..........(((..(((((....)))))..)))((((((((.........)).))))))...(.((((((((((((((((((.......))))))....))))))))).))).). ( -42.30) >consensus GAU_AUCUUUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUCCUUCAGCAAAUCGACACGUCCAUUCGCGAAUGCCAGGCUCUGAUCCUGGCACCAACUCGCGAGUUGGCCA .............(((...(((((....))))))))..((((((((.........)).))))))...(.((((((((((..((((((.......))))))......))))))).))).). (-29.87 = -28.85 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:23 2006