Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,983,613 – 5,983,703 |
Length | 90 |
Max. P | 0.750193 |
Location | 5,983,613 – 5,983,703 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 78.23 |
Mean single sequence MFE | -15.92 |
Consensus MFE | -1.02 |
Energy contribution | -2.10 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.29 |
Mean z-score | -1.73 |
Structure conservation index | 0.06 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5983613 90 + 22407834 ACCUACAUUGCUCAUUCGGCACUAAUCCAUUUUGCAGGCUCUGCAAAAGAGGCUCUAUAUACAUAUUAAUAU--AGUUCAUUCUCA--ACUCCU ........((((.....))))........((((((((...))))))))((((..((((((........))))--)).....)))).--...... ( -15.60) >DroSec_CAF1 39628 90 + 1 ACCUACAUUGCCCAUUCGGCAGUAAUCCAUUUUGCAGGCUAUGCGAAGCAGGCUCUAUAUACAUAUUUAUGU--GGUUCAUGCUCA--ACCAUU ......((((((.....)))))).......((((((.....))))))(((....(((((((......)))))--))....)))...--...... ( -20.10) >DroSim_CAF1 40350 90 + 1 ACCUACAUUGGCCAUUCGGCAAUAAUCCAUUUUGCAGGCUAUGCGAAAGAAGCUCUAUCUACAUAUUUAUGU--AGUUCAUGCUCA--AUCCCU ..........(((....))).........(((((((.....)))))))((.((.....((((((....))))--)).....)))).--...... ( -19.00) >DroEre_CAF1 44551 83 + 1 ACCUACAUGGCGAAUUCGUCACUAAUCCAUUUUGCA-------C--AGGAGGCC--AUAUACAAAUGAAUAUAGAGUUCAUCUACAAAACCCUU ......(((((((.....)).....(((........-------.--.))).)))--))......((((((.....))))))............. ( -10.60) >DroYak_CAF1 43758 88 + 1 ACCUACAUCGCAAAUUCGGCACUAAUCCAUUUUGCAGGCUCUCC--AACAGGCCCUAUAUACAUAUUAAUGU--AGUUCAUCAACA--ACCCCU ..((((((.(((((...((.......))..))))).((((....--....))))..............))))--))..........--...... ( -14.30) >consensus ACCUACAUUGCCCAUUCGGCACUAAUCCAUUUUGCAGGCUAUGC_AAAGAGGCUCUAUAUACAUAUUAAUGU__AGUUCAUCCUCA__ACCCCU .............................(((((((.....))))))).............................................. ( -1.02 = -2.10 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:22 2006