Locus 2216

Sequence ID 2L_DroMel_CAF1
Location 5,980,979 – 5,981,090
Length 111
Max. P 0.597024
window3564

overview

Window 4

Location 5,980,979 – 5,981,090
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.84
Mean single sequence MFE -31.59
Consensus MFE -24.66
Energy contribution -25.10
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -1.53
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.597024
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5980979 111 - 22407834
UAGCGAAUACAAUCGAUUGCGAGGAAUAUCGUGAUCGAAUUUUGGCACACAUCGAUUGUUUCGAGCGAACAGCGACUUGUGUUCCAGUACUACCGCUUGUCGACGGUCACU
.((((.......(((((..(((......)))..)))))...((((.((((((((.((((((.....)))))))))..))))).))))......)))).............. ( -32.90)
>DroSec_CAF1 37042 111 - 1
CAGCGAAUACAAUCGACUUCGAAGAAUAUCGUGAUCGAAUUUCUGCACACAUCGAUUGUUUCGAACGAAGAGCGACUUGUGUUCCAGCACUACCGCUUGUCGACGGUCACU
...((((.((((((((......((((..(((....)))..)))).......))))))))))))..(((.(((((....((((....))))...))))).)))......... ( -31.12)
>DroSim_CAF1 37750 111 - 1
CAGCGAAUACAAUCGACUUCGAAGAAUAUCGUGAUCGAAUUUCUGCACACAUCGAUUGUUUCGAACGAAGAGCGACUUGUGUUCCAGCACUACCGCUUGUCGACGGUCACU
...((((.((((((((......((((..(((....)))..)))).......))))))))))))..(((.(((((....((((....))))...))))).)))......... ( -31.12)
>DroEre_CAF1 41868 111 - 1
CACUGAAAACAAUCGAUUGUAGCGAAUAUCGUGGUCGAAUUUCUGCACACAUCGAUUGUAUCGAGUGAACAACGACUUGUGUUCCCGCACUACCGUUCAUCGACGGUCACU
.((((...((((((((((((.(((((..(((....)))..))).))))).))))))))).((((.(((((........((((....))))....))))))))))))).... ( -30.40)
>DroYak_CAF1 41121 111 - 1
CAGUGAAGACAUUCGAUUGCAGGGAAUAUCGUGGUCGAAUUUCUGCACACAUCGAUUGUAUCGAUUGAACAACGACUUGUGUUCCCGCACUACCGUUCAUCGACGGUCACU
.((((.(((.(((((((..(.((.....)))..))))))).)))(((((..(((.((((.((....)))))))))..))))).....))))((((((....)))))).... ( -32.40)
>consensus
CAGCGAAUACAAUCGAUUGCGAAGAAUAUCGUGAUCGAAUUUCUGCACACAUCGAUUGUUUCGAACGAACAGCGACUUGUGUUCCAGCACUACCGCUUGUCGACGGUCACU
...((((.(((((((((((((((((...(((....))).))))))))...)))))))))))))..(((..((((....((((....))))...))))..)))......... (-24.66 = -25.10 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:21 2006