Locus 2215

Sequence ID 2L_DroMel_CAF1
Location 5,978,598 – 5,978,703
Length 105
Max. P 0.730052
window3563

overview

Window 3

Location 5,978,598 – 5,978,703
Length 105
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 93.88
Mean single sequence MFE -33.22
Consensus MFE -28.94
Energy contribution -29.34
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.87
SVM decision value 0.42
SVM RNA-class probability 0.730052
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5978598 105 - 22407834
GCGAUGCCGCGUCACCAGCGCAGAGUGAAUCGAAUUGAGUGGAGUUGACUCCGCUUCGGC---UUCUUUUACUGAUUUCGAUUCUGAAUCUGAAUCUGCUACCUUCGA
(((....))).....(((..((((..((((((((.(.(((((((....))))((....))---.......))).).))))))))....))))...))).......... ( -33.50)
>DroSec_CAF1 34674 105 - 1
UCGAUGCCGCGUCACCAGCGCAGAGUGAAUCGAAUUGAGUGGAGUUGACUCCGCUUCGGC---UUCUGCUACUGAUUUCGAUUCUGAAUCUGAAUCUGCUACCUUCGA
((((.(((((.......)))((((..((((((((..((((((((....)))))))).(((---....)))......))))))))....)))).....)).....)))) ( -33.60)
>DroSim_CAF1 35376 105 - 1
GCGAUGCCGCGUCACCAGCGCAGAGUGAAUCGAAUUGAGUGGAGUUGACUCCGCUUCGGC---UUCUGCUACUGAUUUCGAUUCUGAAUCUGAAUCUGCUACCUUCGA
(((....))).....(((..((((..((((((((..((((((((....)))))))).(((---....)))......))))))))....))))...))).......... ( -33.60)
>DroEre_CAF1 39548 99 - 1
GCGAUGCCGCGUCACCAGCGCAGAGUGAAUCGAAUUGAGUGGAGUUGACUCCGC---------UGCUGCUACUGAUUUCGAUUCUGAAUCUGAAUCUGCUACCAUCGA
.(((((.(((.......)))((((..((((((((.(.(((((((....))))((---------....)).))).).))))))))....))))..........))))). ( -33.10)
>DroYak_CAF1 38747 107 - 1
GCGAUGCCGCGUCACCAGCGCAGAGUGAAUCGAAUUGAGUGGAGUUGACUCCGCUUCUGCCACUGCUGCUACUGAUUUCGAUUCUGAAUCUGAA-CUGCUACCUUCGA
(((....))).....(((..((((..((((((((.(.(((((((....))))((....((....)).)).))).).))))))))....))))..-))).......... ( -32.30)
>consensus
GCGAUGCCGCGUCACCAGCGCAGAGUGAAUCGAAUUGAGUGGAGUUGACUCCGCUUCGGC___UUCUGCUACUGAUUUCGAUUCUGAAUCUGAAUCUGCUACCUUCGA
.(((.(((((.......)))((((..((((((((.(.(((((((....))))((....))..........))).).))))))))....)))).....)).....))). (-28.94 = -29.34 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:20 2006