Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,967,062 – 5,967,155 |
Length | 93 |
Max. P | 0.765881 |
Location | 5,967,062 – 5,967,155 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 75.86 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -19.36 |
Energy contribution | -19.34 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.35 |
Mean z-score | -1.34 |
Structure conservation index | 0.66 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.765881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5967062 93 + 22407834 AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCGUAAUCAUGAUGUUCAGCGGGUUGAGGAUUAAACGGAGGCAUAUGCUCCA-- .(((((((((......))))))....((((...........))))..)))((((.(((((....))))).))))...((((.(....))))).-- ( -29.30) >DroPse_CAF1 41023 82 + 1 AUAACCCGCCUCCAAAGGCGGGAAACGAUGGAAAGGUAUGGGC--AAUCG----GUGCAGCUUGUUGUUGAU-------AGCCAGGUGCCACAGC ....(((((((....)))))))............(((((.(((--.((((----..((((....))))))))-------.)))..)))))..... ( -30.30) >DroSim_CAF1 23452 93 + 1 AUGACCCGCCCUCAUAGGCGGGAAACACGGGAAAGUUGUGACCGAAAUCAUGAUGUUCAGCGGGUUGAGGGUUAAACGGAGGCAUAUGCUCCA-- .((((((((((.(.....(((....).)).(((.((..(((......)))..)).))).).))))...))))))...((((.(....))))).-- ( -29.60) >DroEre_CAF1 27769 93 + 1 AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCGGCAUCGUGGUGUACAGCGGGUUGAGGGUUUAACAGAGGCAUGUGCUCCA-- ((((((((((......)))))).....(((...........)))...))))((.(((((((..(((((....)))))....)).))))).)).-- ( -29.80) >DroYak_CAF1 26667 93 + 1 AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCGGAAUCAUGGUGUACUGCGGGCUGAGGAUUUAACGGAGGCAUAUGCUCCA-- ....((((((......)))))).....(((....((.(((((((......)))).))).))...)))..........((((.(....))))).-- ( -26.50) >DroPer_CAF1 40792 82 + 1 AUAACCCGCCUCCAAAGGCGGGAAACGAUGGAAAGGUAUGGGC--AAUCG----GUGCAGCUUGUUGUUGAU-------AGCCAGGUGCCACAGC ....(((((((....)))))))............(((((.(((--.((((----..((((....))))))))-------.)))..)))))..... ( -30.30) >consensus AUGACCCGCCCUCAAAGGCGGGAAACACGGGAAAGUUGUGACCG_AAUCAUG_UGUACAGCGGGUUGAGGAUU_AACGGAGGCAUAUGCUCCA__ ....((((((......))))))......(((.....((((.((........(((.(((((....))))).))).......))))))..))).... (-19.36 = -19.34 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:16 2006