| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,964,284 – 5,964,374 |
| Length | 90 |
| Max. P | 0.529176 |
| Location | 5,964,284 – 5,964,374 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -31.05 |
| Consensus MFE | -20.38 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5964284 90 - 22407834 CAGCAGUCCGCUGCGAUUGGGAGCCACUGGUUCUGGUAGUUGCAAUUGAGAGUUCGAACCGCGAGGUUAAUGCUGCCAACGCAAUUACCA ..((((....)))).....((((((...))))))(((((((((..(((..(((...((((....))))...)))..))).))))))))). ( -36.00) >DroSec_CAF1 20288 90 - 1 CAGCAGUCCGCUGCUAUUGGGAGCCACUGCUUCUGGUAGUUGUAAUUGAGAGUUCGAACCGCGAGGUUAAUGCUGCCAACGCAAUCACCA .(((((....)))))...((((((....))))))(((.(((((..(((..(((...((((....))))...)))..))).))))).))). ( -31.70) >DroSim_CAF1 20394 90 - 1 CAGCAGUCCGCUGCGAUUGGCAGCCACUGCUUCUGGUAGUUGCAAUUGAGAGUUCGAACCGCGAGGUUAAUGCUGCCAACGCAAACACCA .((((((..(((((.....))))).))))))...(((..((((..(((..(((...((((....))))...)))..))).))))..))). ( -34.80) >DroEre_CAF1 24990 90 - 1 CAGCAGUCCGCUGCAAUGGGGAGCCACUGCUUCUGGUAGUUGCAAUUGAGAGUUCGACCCGCGAGGUUAGUGCUACCAACGCAAUCGCCG ..((((....))))....((((((....))))))((..(((((..(((..(((.(...((....))...).)))..))).)))))..)). ( -30.70) >DroWil_CAF1 34382 88 - 1 -UGUGGUUUCUUGCAAUC-GGAGCCAUUUGCUCGAAUAGUUGCAAUUGACAAUUCGCGUCGUGAGGUUAAAGUUACAAAGAAAGACGCCA -....(((..(((((((.-.((((.....)))).....)))))))..))).....(((((.....((.......)).......))))).. ( -20.20) >DroYak_CAF1 23967 90 - 1 CAGCAGUCGGCUGCGAUUGGGAGCCACUGCUUCUGGUAGUUGCAAUUGAGAGUUCGACCCGCGAGGUUAAUGCUACCAACGCAAUCGCCC .((((((.((((.(.....).))))))))))...((..(((((..(((..(((.....((....)).....)))..))).)))))..)). ( -32.90) >consensus CAGCAGUCCGCUGCGAUUGGGAGCCACUGCUUCUGGUAGUUGCAAUUGAGAGUUCGAACCGCGAGGUUAAUGCUACCAACGCAAUCACCA ..((((....))))....((((((....))))))(((..((((..(((..(((...((((....))))...)))..))).))))..))). (-20.38 = -21.30 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:11 2006