Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,958,311 – 5,958,407 |
Length | 96 |
Max. P | 0.993556 |
Location | 5,958,311 – 5,958,407 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 68.69 |
Mean single sequence MFE | -20.23 |
Consensus MFE | -10.05 |
Energy contribution | -10.50 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.31 |
Mean z-score | -2.43 |
Structure conservation index | 0.50 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5958311 96 + 22407834 -----------GACCUCCGAAGCCAGGACCUCCAAAACCAGGUCCUCCAAAACCAGGUCCACCAAACC--CGGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA -----------(((((........(((((((........)))))))........))))).........--(((((.......((((((.....))))))...))))).. ( -21.89) >DroSec_CAF1 14124 81 + 1 -----------GACCGCCGAAGCCAGGACCCCCAAAACCAGGUCCUCCGAAAC-----------------CAGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA -----------............(((((............((((((.......-----------------.)))))).....((((((.....))))))...))))).. ( -17.90) >DroSim_CAF1 14157 72 + 1 --------------------AGCCAGGACCUCCAAAACCAGGUCCUCCGAACC-----------------CAGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA --------------------...(((((............((((((.......-----------------.)))))).....((((((.....))))))...))))).. ( -17.90) >DroEre_CAF1 14024 81 + 1 -----------GACCUCCGAAUCCUGGACCUCCAAAGCCAGGUCCCCCGAAGC-----------------CAGGACCCCCAAAGUUGUUCUCCACGAUAACCUCCUGUA -----------..............((((((........))))))........-----------------(((((........((((((......)))))).))))).. ( -14.80) >DroMoj_CAF1 17214 101 + 1 UCCAAAUGCAGGCCUGCCAAACGACGGUCCGCCAAACGGUGGACCACCAAAGCCGCCUC------U--GCCCGGCAAACCAAAGUUAUUCUCCACAUUCACUUCCUGCA ......((((((.............((((((((....))))))))......((((....------.--...))))............................)))))) ( -31.10) >DroAna_CAF1 13995 81 + 1 -----------GCCCUCCAAAACCUGGACCUCCAAAGCCAGGACCUCCGAAUC-----------------CUGGCCCUCCAAAGUUGUUCUCCACAACCACUUCCUGAA -----------....((((.....))))........(((((((........))-----------------)))))........(((((.....)))))........... ( -17.80) >consensus ___________GACCUCCGAAGCCAGGACCUCCAAAACCAGGUCCUCCGAAAC_________________CAGGACCACCAAAGUUGUUCUCCACGAUUACCUCCUGUA .........................((((((........)))))).........................(((((........(((((.....)))))....))))).. (-10.05 = -10.50 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:09 2006