Locus 2205

Sequence ID 2L_DroMel_CAF1
Location 5,952,310 – 5,952,416
Length 106
Max. P 0.824335
window3549

overview

Window 9

Location 5,952,310 – 5,952,416
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -20.25
Consensus MFE -15.63
Energy contribution -15.93
Covariance contribution 0.31
Combinations/Pair 1.22
Mean z-score -1.62
Structure conservation index 0.77
SVM decision value 0.69
SVM RNA-class probability 0.824335
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5952310 106 + 22407834
AUCCAUCUAUCGCUGUGUGAAUUGCCUAACGCAGUUUACUAUUGAGCAAAAAAGCAAGCGAUAUAAAGCAAAGGGUGAG-UACAGCAGUACAGCAGAAAUAAAAGA---A
...(((((((((((..(((((((((.....)))))))))......((......)).))))))..........))))).(-(((....))))...............---. ( -24.20)
>DroSec_CAF1 8046 98 + 1
AUCUAUCUAUCGCUGUGUGAAUUGCCUAACGCAGUUUACUAUUGAGCAAAAAAGCAAGCGAUAUAAAACAAAGGGUGAG-UAC--------AGCAGAAAUUAAUGA---A
.(((...(((((((..(((((((((.....)))))))))......((......)).)))))))..........(.((..-..)--------).)))).........---. ( -20.90)
>DroSim_CAF1 8042 98 + 1
AUCCAUCUAUCGCUGUGUGAAUUGCCUAACGCAGUUUACUAUUGAGCAAAAAAGCAAGCGAUAUAAAACAAAGGGUGAG-UAC--------AGCAGAAAUUAAAGA---A
...(((((((((((..(((((((((.....)))))))))......((......)).))))))..........)))))..-...--------...............---. ( -20.70)
>DroEre_CAF1 7969 97 + 1
AUCCAUUUAUCGCUGUGUGAAUUGCUUAACUCAAUUUACUAUUGAGCAAAAAAGCAAGCGAUAUAAUACAAAGGGUGAG-UAC--------AGGAGAAAUAAAAGA----
.((((((((((..(((((..(((((((...(((((.....)))))((......)))))))))...)))))...))))))-)..--------.)))...........---- ( -20.50)
>DroYak_CAF1 10346 101 + 1
AUCCAUCUAUCGCUGUGUAAAUUGUCUAACUCAAUUUACCAUUGAGCGAAAAAGCAAGCGAUAUAAAACCAAGGGUGAG-UAC--------AGCAGAAGUAAUAUAAUAA
...((((((((((((.((((((((.......))))))))).....((......)).))))))..........)))))..-...--------................... ( -18.20)
>DroPer_CAF1 18654 97 + 1
CAAAAUCUAUCGCUGUGUGAAUUGUUUGAUACAAUUCUCAAUGGAACAAAAGAUCAAGCGUUAUAGGACAGAGCGUAAGGCAC--------AGAA--CACUAUUGA---A
............(((((((((((((.....)))))))....................(((((.........)))))...))))--------))..--.........---. ( -17.00)
>consensus
AUCCAUCUAUCGCUGUGUGAAUUGCCUAACGCAAUUUACUAUUGAGCAAAAAAGCAAGCGAUAUAAAACAAAGGGUGAG_UAC________AGCAGAAAUAAAAGA___A
.......(((((((..(((((((((.....)))))))))......((......)).)))))))............................................... (-15.63 = -15.93 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:07 2006