Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,947,217 – 5,947,330 |
Length | 113 |
Max. P | 0.500000 |
Location | 5,947,217 – 5,947,330 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -17.44 |
Consensus MFE | -11.86 |
Energy contribution | -11.81 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.26 |
Structure conservation index | 0.68 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5947217 113 + 22407834 CAC-UG--AU-C-UUCUUUGC--UUGCAGAUUCCCCCUGUUCACGGCUAUUCACAAAAUAUGCACAAAUCAGCUCAAGCCUAAUGAUUUAAUUGAUUGCAUACGCAAUCACCCUGAGCAU ...-.(--((-(-(.(.....--..).))))).....((((((.((...................((((((((....))....))))))...(((((((....))))))))).)))))). ( -21.50) >DroVir_CAF1 3793 114 + 1 UGU-UU--AUAU-UUAUAUAC--UUGCAGAUUCCCAUUGUUCACCGCCAUACACAAAAUUUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUCGAUUGCAUACGCAAUCAUCCCGAGCAU ...-..--....-........--.((((((((....((((............)))))))))))).......((((.........(((...)))((((((....)))))).....)))).. ( -17.30) >DroGri_CAF1 3158 108 + 1 ---------UAU-CAACUUAC--UUUCAGAUUCCCCCUAUUUACUGCCAUACACAAAAUUUGCACAAAUCAGCUUAAGCCUAAUGAUUUAAUCGAUUGCAUACGCAAUCAUCCUGAGCAU ---------...-........--.(((((....................................((((((((....))....))))))....((((((....))))))...)))))... ( -15.30) >DroWil_CAF1 4290 115 + 1 AAU-UA--AU-CAAUCGUUCC-UUUACAGAUUCCCCUUGUUCACGGCUAUACACAAAAUAUGCACAAAUCAGCUUAAACCUAAUGAUUUAAUCGAUUGCAUACGCAAUCAUCCAGAGCAU ...-..--..-.....((((.-......((((.............(((((.......))).))..((((((............))))))))))((((((....)))))).....)))).. ( -15.90) >DroMoj_CAF1 3570 107 + 1 ----------AU-UCAAUUUC--UUGCAGAUUCCCACUGUUCACAGCUAUACAUAAAAUUUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUUGAUUGCAUACGCAAUCAUCCCGAGCAU ----------.(-((....((--(((((((((....(((....)))..........)))))))........((....))...))))......(((((((....)))))))....)))... ( -16.04) >DroPer_CAF1 13022 118 + 1 GAUGUGUCUU-U-CUCUUCUCUUUUCUAGAUUCCCCCUGUUUACGGCCAUUCAUAAGAUAUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUCGAUUGCAUACGCAAUCAUCCCGAGCAU ..(((((...-(-((....(((.....)))......(((....))).........)))...))))).....((((.........(((...)))((((((....)))))).....)))).. ( -18.60) >consensus _AU_U___AU_U_UUAUUUAC__UUGCAGAUUCCCCCUGUUCACGGCCAUACACAAAAUAUGCACAAAUCAGCUUAAGCCUAAAGAUUUAAUCGAUUGCAUACGCAAUCAUCCCGAGCAU .....................................(((((.......................(((((..............)))))....((((((....)))))).....))))). (-11.86 = -11.81 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:06 2006