Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,942,987 – 5,943,107 |
Length | 120 |
Max. P | 0.926384 |
Location | 5,942,987 – 5,943,107 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.44 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -16.44 |
Energy contribution | -16.57 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.21 |
Mean z-score | -2.19 |
Structure conservation index | 0.55 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5942987 120 + 22407834 AUUUUUAUAACGUUACGCACGGCAUCAUCAAGACUCUGUAAGCUUGCCGAUCCGGAUUUGAUCGUAGAUCCAGUUUUGGAGAUAGCCUCAUAAAGCUUCUCCUUUACGACAUCGGUAAUU ................((((((..((.....))..))))..))((((((((..(((((((....))))))).((...(((((.(((........))))))))...))...)))))))).. ( -30.40) >DroSec_CAF1 5726 111 + 1 AAUUUCAUAACGUUAUUUACGGCUUUAUCAAGAC---------UUGCCGAUCCGGAUUUGAUCGCAGAUCCAGUUUUGGAGAUAGCCUCAUAAAGCUUCUCCUGUACAACAUCGGUAAGU ..........(((.....)))...........((---------((((((((..(((((((....))))))).((...(((((.(((........))))))))...))...)))))))))) ( -34.20) >DroEre_CAF1 5787 120 + 1 AUUUUAAAACUGUUAGUCAUAGCGUCUUCAAGACCCUGCAUGGUUAACGAUCCAUGUUUGAUCAUAGAUCCAGCAUUGGAGAUAAACUUAUAAAGCUUAUUCUUCAUCACAUCGGAAAGU ..........(((((..(((.(((((.....)))...)))))..))))).((((((((.((((...)))).)))))(((((((((.((.....)).))).)))))).......))).... ( -24.60) >consensus AUUUUAAUAACGUUACUCACGGCAUCAUCAAGAC_CUG_A_G_UUGCCGAUCCGGAUUUGAUCGUAGAUCCAGUUUUGGAGAUAGCCUCAUAAAGCUUCUCCUUUACAACAUCGGUAAGU ..........(((.....)))......................((((((((..(((((((....)))))))((((((((((.....))).))))))).............)))))))).. (-16.44 = -16.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:05 2006