Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,940,759 – 5,940,860 |
Length | 101 |
Max. P | 0.823764 |
Location | 5,940,759 – 5,940,860 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 98.35 |
Mean single sequence MFE | -19.34 |
Consensus MFE | -18.94 |
Energy contribution | -18.94 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.98 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5940759 101 + 22407834 CUUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAGUAAAACCCAAUGCCCAGAUGUCCUGCU .((((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....)))))).......... ( -18.94) >DroSec_CAF1 3437 101 + 1 CUUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAGUAAAACCCAGUGCCCAGAUGUCCUGCU .((((((.((...((((((((((.......).)))))))))(((((.......(((..........))).......)))))..)))))))).......... ( -20.54) >DroEre_CAF1 3511 101 + 1 CUUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAAUAAAACCCAAUGCCCAGAUGUCCGGCU .((((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....)))))).......... ( -18.94) >DroYak_CAF1 3148 101 + 1 CUUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAAUAAAACCCAAUGCCCAGAUGUCCUGCU .((((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....)))))).......... ( -18.94) >consensus CUUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAAUAAAACCCAAUGCCCAGAUGUCCUGCU .((((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....)))))).......... (-18.94 = -18.94 + -0.00)
Location | 5,940,759 – 5,940,860 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 98.35 |
Mean single sequence MFE | -23.31 |
Consensus MFE | -23.31 |
Energy contribution | -23.31 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 1.00 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5940759 101 - 22407834 AGCAGGACAUCUGGGCAUUGGGUUUUACUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAAG ...........(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))).. ( -23.31) >DroSec_CAF1 3437 101 - 1 AGCAGGACAUCUGGGCACUGGGUUUUACUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAAG ...........(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))).. ( -23.31) >DroEre_CAF1 3511 101 - 1 AGCCGGACAUCUGGGCAUUGGGUUUUAUUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAAG ...........(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))).. ( -23.31) >DroYak_CAF1 3148 101 - 1 AGCAGGACAUCUGGGCAUUGGGUUUUAUUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAAG ...........(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))).. ( -23.31) >consensus AGCAGGACAUCUGGGCAUUGGGUUUUACUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAAG ...........(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))).. (-23.31 = -23.31 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:02 2006