Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,939,065 – 5,939,162 |
Length | 97 |
Max. P | 0.688458 |
Location | 5,939,065 – 5,939,162 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.58 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -19.67 |
Energy contribution | -20.30 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.68 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5939065 97 + 22407834 UAGACGGAUACAAAUGUAUCCGUGUAUCUGGACAAGCACUUGCA---------------------UCCGUACUCCGCUUGUGCAAGUCGCCGAAUGCUUUAUAAUUGAGUUUUUCACA ((.((((((((....)))))))).)).........(((((((((---------------------(..((.....))..)))))))).)).(((.((((.......))))..)))... ( -28.60) >DroSec_CAF1 1791 100 + 1 UAGACAGAUACAAAAGUAUCUGUGUAUCUGGACAUGCACUUGAA------------------AUGUCUGAACUCCACUUGUGCAAACCGCCGAAUGCUUUAUAAUUGAGUUUUUCACA ((.((((((((....)))))))).))...((((((.........------------------))))))((((((((.(((.((.....))))).))..........))))))...... ( -22.10) >DroEre_CAF1 1847 115 + 1 CAGACGGAUACGAUAGUAUCUGUGUAUCUGGACAUGCACCUGCAUCCGUCAGGGGCACUGGAAUGUGUGAACUCCGCUUGUGCAA---GCCGAAUGCUUUAUAAUUGAGUUUUUCACA (((((((((((....))))))))((..((((..((((....))))...))))..)).)))...((((.((((((...(((((.((---((.....)))))))))..))))))..)))) ( -35.90) >DroYak_CAF1 1541 115 + 1 UAGACGGAUACACUAGUAUCUGUGUAUCUGGACAUGCACUUGCAUCCGUUUGUGGCACUAGAAUGUAUGUACUCUGCUUAUGCAA---GCCGAAUGCUUUGUAAUUGAGUUUUUCACA (((((((((((((........))))))))(((..(((....))))))))))).(((((......))........(((....))).---)))(((.((((.......))))..)))... ( -28.90) >consensus UAGACGGAUACAAAAGUAUCUGUGUAUCUGGACAUGCACUUGCA__________________AUGUCUGAACUCCGCUUGUGCAA___GCCGAAUGCUUUAUAAUUGAGUUUUUCACA ((.((((((((....)))))))).))...((...(((((..((................................))..))))).....))(((.((((.......))))..)))... (-19.67 = -20.30 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:00 2006