Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 626,262 – 626,366 |
Length | 104 |
Max. P | 0.851486 |
Location | 626,262 – 626,366 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -28.54 |
Consensus MFE | -23.28 |
Energy contribution | -24.04 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.69 |
Structure conservation index | 0.82 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 626262 104 + 22407834 UCGUAUUGGCUCGAUUUAUCCGAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCUCCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA .....((((((..........((((.....))))..((((....(((((((.(((...)))(((((...))))).....))))))).......)))))))))). ( -31.60) >DroSec_CAF1 15531 104 + 1 UCGUAUUGGGUCGAUUUAUCCAAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA ..(((((((...((((.....))))...(((....)))))))))).....(((((((((((....(((((......)))))...))))).....)))))).... ( -25.50) >DroSim_CAF1 15082 104 + 1 UCGUAUUGGCUCGAUUUAUCCGAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA ..(((((((((.((....)).((((.....))))..))))))))).....(((((((((((....(((((......)))))...))))).....)))))).... ( -28.80) >DroEre_CAF1 19176 104 + 1 UCGUAUUGGCUCGACGUAUCUGAUCUAACCGAUCAAGGCCAAUACAUAUCGUUGGUCUCCGGGCGCAAAGUACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA ..(((((((((.((....))(((((.....))))).))))))))).....(((((((((((....(((((......)))))...)))).....))))))).... ( -31.50) >DroYak_CAF1 18136 104 + 1 UCGUAUUGGAUCGACGUAUCCGAUCUCACCGAUCAAGGCGAAUACAUCUCGUUGGUCUCCGGGAGCAAAGCACCAUUUUUAAAAUGGAACAAAGGCCAGCCAAA ..(((((((((((.......))))))(.((......)).)))))).....((((((((..(...((...)).(((((.....)))))..)..)))))))).... ( -25.30) >consensus UCGUAUUGGCUCGAUUUAUCCGAUCUAACCGAUCACGGCCAAUACAUUUCGUUGGUUUCCGGGAGCAAAGCACCAUUUUUGAAAUGGAACAAAGGCCAGCCAAA ..(((((((((.((....)).((((.....))))..))))))))).....(((((((((((....(((((......)))))...)))).....))))))).... (-23.28 = -24.04 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:25 2006