| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 83,907 – 84,005 |
| Length | 98 |
| Max. P | 0.628034 |
| Location | 83,907 – 84,005 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.52 |
| Mean single sequence MFE | -33.52 |
| Consensus MFE | -22.75 |
| Energy contribution | -22.83 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 83907 98 + 22407834 GUGGAAGGUAUGCAACUGUUGGG------CGGUGGAGAGUCUAUGGCUGGU-GGCGUUAGGACAACUGCCGAAUCGGCGGAAGAUGUGUAUCGUAUGCGUUUCUU ..((((.((((((..(((((((.------(((..(...(((((((.(....-).)))..))))..)..)))..)))))))..(((....))))))))).)))).. ( -31.90) >DroSec_CAF1 56352 98 + 1 GCGGAGGGUAUGCAACUGUUGGG------UGGUGGAGAGUCUAUGGCUGGU-GGUGUUAGGACAACUGCCGAAUCGGCGGAAGAUGUGUACCGUAUGCGCUUCUU ..((((.((((((.((..(..(.------(.((((.....)))).))..).-.))....(((((.((((((...))))))......))).)))))))).)))).. ( -33.70) >DroSim_CAF1 58844 98 + 1 GCGGAGGGUAUGCAACUGUUGGG------CGGUGGAGAGUCUAUGGCUGGU-GGUGUUAGGACAACUGCCGAAUCGGCGGAAGAUGUGUAUCGUAUGCGCUUCUU ..((((.((((((..((((((((------(.((((.....)))).)))((.-.((((....)).))..))....))))))..(((....))))))))).)))).. ( -35.00) >DroEre_CAF1 63321 98 + 1 GCGGAAGGCAUGCAACUGUUGGG------UGGUGGAGAGUCUAUGGCUGGU-GGUGUUAGGACCACCGCCGAAUCGGCGGAAGAUGUGUAGCGUAUACGUUUCUU ((.((.(((............((------(.((((.....)))).)))(((-(((......)))))))))...)).))(((.((((((((...))))))))))). ( -32.40) >DroYak_CAF1 56421 104 + 1 GUGGAAGACAUGCAACUGUUGGGUGGGGGUGGUGGAGAGUCUAUGGCUGGU-GGUGUUAGGACCACCGCCGAAUCGGCGGAAGAUGUGUAGCGUAUGCGUUUCUU ....((((.(((((.((((((..(.(((((.((((.....)))).)))(((-(((......)))))).)).)..))))))...(((.....))).))))).)))) ( -35.40) >DroPer_CAF1 76716 89 + 1 GGGGUUGGCACACUACGACUGGG----------------GCUAUAGCUUGUAGGUGUCAAAACCACUGCUGAAUCAGCAGAAGAGGUAUAGCGUAUGCGUUUCUU ((..(((((((.(((((((((..----------------....))).)))))))))))))..)).((((((...))))))((((((..((.....))..)))))) ( -32.70) >consensus GCGGAAGGCAUGCAACUGUUGGG______UGGUGGAGAGUCUAUGGCUGGU_GGUGUUAGGACAACUGCCGAAUCGGCGGAAGAUGUGUAGCGUAUGCGUUUCUU ..((((.((((((.........................((((.((((........))))))))..((((((...))))))............)))))).)))).. (-22.75 = -22.83 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:28 2006