Locus 2198

Sequence ID 2L_DroMel_CAF1
Location 5,936,682 – 5,936,775
Length 93
Max. P 0.900780
window3540

overview

Window 0

Location 5,936,682 – 5,936,775
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.18
Mean single sequence MFE -48.43
Consensus MFE -26.67
Energy contribution -27.45
Covariance contribution 0.78
Combinations/Pair 1.23
Mean z-score -2.40
Structure conservation index 0.55
SVM decision value 1.02
SVM RNA-class probability 0.900780
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5936682 93 - 22407834
CCGCCGA---GGCGUAGGGCGUGCUAGUGGAGGACACCACCGCCGCAACGGCUGUGGCAG---------UGAUGCCCGGCAGCUUGCUGGCCGCCUCCGCUAUCA
..((.((---(((...(((((((((.((((......)))).((((((.....))))))))---------).))))))(((((....)).)))))))).))..... ( -45.30)
>DroVir_CAF1 27409 99 - 1
UUGCCUGGGCGCCAUAGGGCGAC------GUGGAAACCACAGCGGCCACUGCCGUUGCCGUUGCCGCCGUAAUGCCAGGCAAUUUGCUGGCCGCCUCGGCAAUCA
(((((.((((((((...((((((------(.(....)..(((((((....))))))).)))))))(((.........))).......))).))))).)))))... ( -48.00)
>DroSec_CAF1 22869 93 - 1
CCGCCGA---GGCAUAGGGCGUGCUGGUGGAGGACACCACCGCCGCAACGGCUGUGGCAG---------UGAUGCCCGGCAACUUGCUGGCCGCCUCCGCGAUCA
.(((.((---(((...((((((((((((((......)))))((((((.....))))))))---------).))))))(((.........)))))))).))).... ( -49.40)
>DroEre_CAF1 22605 93 - 1
CCGCCGA---GACGUAGGGCGCGCUGGUGGAGGAGACCACCGCCGCAACGGCUGUGGCAG---------UGAUGCCCGGCAGCUUGCUGGCCGCCUCUGCGAUCA
.......---(((((((((((.((((((((.(....)..)))))((((..((((.((((.---------...))))))))...)))).))))))).))))).)). ( -48.20)
>DroYak_CAF1 22752 93 - 1
CCGCCGA---GGCGUACGGCGUGCUGGUGGAGGAGACCACUGCCGCCACGGCUGUGGCGG---------UGAUACCCGGCAGCUUGCUGGCCGCCUCUGCGAUCA
.(((.((---((((..(((((.((((.(((.(....)....((((((((....)))))))---------).....))).)))).)))))..)))))).))).... ( -54.40)
>DroAna_CAF1 23096 93 - 1
CCGUUGA---GGCAUAGGGUGUGCUGGUGGAGGACACCACGGCGGCAACGGCCGUGGCUG---------UAAUGGCAGGCAACUUGCUGGCCGCCUCGGCAAUCA
..(((((---((((((((((((.((.....)).)))))((((((....).)))))..)))---------)...(((.(((.....))).)))))))))))..... ( -45.30)
>consensus
CCGCCGA___GGCAUAGGGCGUGCUGGUGGAGGACACCACCGCCGCAACGGCUGUGGCAG_________UGAUGCCCGGCAACUUGCUGGCCGCCUCCGCGAUCA
.((((............)))).....(((((((...((((.((((...)))).))))...............((.(((((.....))))).)))))))))..... (-26.67 = -27.45 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:58 2006