Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,934,929 – 5,935,024 |
Length | 95 |
Max. P | 0.893212 |
Location | 5,934,929 – 5,935,024 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -14.12 |
Energy contribution | -13.98 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.26 |
Mean z-score | -1.91 |
Structure conservation index | 0.63 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5934929 95 + 22407834 UAAGUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGUGUUUCUGUGU-UUAA---GGA---AACA--AAAAAAAAAAGAAAAGUGAAGG--- ...................---((((((((((.......)))))))).(((((...(((((...(-((..---(..---..).--.))).....))))).)))))))--- ( -22.00) >DroPse_CAF1 25240 101 + 1 AA-UUGUAAUUUCUUUUUGUGCUCAUGGCAGCUAAUUUUGUUGCCUUUUUCACACGUUUCUUUGU-UUGCCACGCCCCCGAGGAAAUAAA-------CCAGGGCAGGGGC ..-............(((.(((((..((((((.......))))))..........(((((((((.-..((...))...)))))))))...-------...))))).))). ( -24.40) >DroSec_CAF1 20843 90 + 1 UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGU-UUAA---GGA---AACA--AAAAAAAG----AAAGUAAAGG--- ..-(((((..(((((.(((---(....))))....(((((((.((((...((((......)))).-..))---)).---))))--)))..)))----))..))))).--- ( -21.50) >DroSim_CAF1 20129 88 + 1 UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGU-UUGA---GGA---AACA--AAAAAA------AAAGUGAAGG--- ..-(((((..(((((.(((---(....))))....(((((((.((((...((((......)))).-..))---)).---))))--))))))------))..))))).--- ( -21.90) >DroEre_CAF1 20827 85 + 1 UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUGCUGUGU-UUAA---GGA---AACA--AAAAA---------AUAGGAGA--- ..-.........(((((((---(....))......(((((((.((((...(((((...)).))).-..))---)).---))))--)))..---------..))))))--- ( -20.60) >DroYak_CAF1 20978 91 + 1 UA-UUUUAAGUUUUUCCUG---CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGUGUUAA---GGACAAAACAAAAAAAA---------AUAGGAGA--- ..-......(((((((((.---..((((((((.......))))))))...((((((....))))))...)---))).)))))........---------........--- ( -23.50) >consensus UA_UUUUAAGUUUUUCCUG___CCAAGGCAGCUAAUUUUGUUGCCUUUUUCACGCGUUUCUGUGU_UUAA___GGA___AACA__AAAAA_______AAAGUGAAGG___ .........(((..(((.......((((((((.......))))))))....(((((....)))))........)))...)))............................ (-14.12 = -13.98 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:55 2006