Locus 2195

Sequence ID 2L_DroMel_CAF1
Location 5,933,226 – 5,933,323
Length 97
Max. P 0.841495
window3536

overview

Window 6

Location 5,933,226 – 5,933,323
Length 97
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 84.22
Mean single sequence MFE -34.87
Consensus MFE -25.86
Energy contribution -26.26
Covariance contribution 0.40
Combinations/Pair 1.15
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 0.75
SVM RNA-class probability 0.841495
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5933226 97 - 22407834
CACAUUUCGGAA-AAGCCUGGGAGGUUUCCCAGGUGUUUUUCUGUUUCGAAA-UGG--------------GCGGGAAAUUUGGAGUAAAAGGGAAACUCCUUGAUUUCCGUAA
..((((((((((-..(((((((......))))))).........))))))))-)).--------------(((((((.(..(((((.........)))))..).))))))).. ( -38.40)
>DroSec_CAF1 19118 111 - 1
CACAUUUCAGAAAAAGCCUGGGAGGUUUUCCAGGUGUUUUUCUGCGGCGAAA-UGGGGGAAGAGGG-GCUGCGGGAAAUUCGGGGUAAAAGAGAAACUCCUUGAUUUCCGUAA
........(((((((((((((((....)))))))).)))))))(((((....-.............-))))).(((((((.(((((.........)))))..))))))).... ( -34.03)
>DroSim_CAF1 18430 112 - 1
CACAUUUCGGAAAAAGCCUGGGAGGUUUUCCAGGUGUUUUUCUGCGGCGAAA-GGUGGGAAGGGGGUGCUGCGGAAAAUUCGGGGUAAAAGAGAAACUCCUUGAUUUCCGUAA
..(((..((((((((((((((((....)))))))).))))))).((.(....-).)).....)..))).((((((((..((((((.............)))))))))))))). ( -38.62)
>DroEre_CAF1 19181 109 - 1
CACAUUUCCGUU-GAGCCUGGGAGGUUUUCCAGGUGUUUUUCUGCGCAGCAGUUGCGGCAAG--GG-GUGGCGGGAAAUUCGGGUUAAAAGAGAAACUCCUUGAUUUCCGUAA
(((.(((((((.-..((((((((....))))))))......((((...))))..)))).)))--..-)))(((((((....(((((........))))).....))))))).. ( -31.80)
>DroYak_CAF1 19214 108 - 1
CACAUUUCGGAA-AAGCCUGGGAGGUUUUCCAGGUGUUUUUCUGCGGCGAAA-AGGGGAAAG--GG-GAUGCGGGAUAUUCGGGGUAAAAGCGAAACUCCUUGAUUUCCGUAA
..(((..(....-..((((((((....))))))))..((((((.(.......-.).))))))--).-.)))(((((...((((((.............)))))).)))))... ( -31.52)
>consensus
CACAUUUCGGAA_AAGCCUGGGAGGUUUUCCAGGUGUUUUUCUGCGGCGAAA_UGGGGGAAG__GG_GCUGCGGGAAAUUCGGGGUAAAAGAGAAACUCCUUGAUUUCCGUAA
.......(((((...((((((((....))))))))....)))))..........................(((((((.(..(((((.........)))))..).))))))).. (-25.86 = -26.26 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:54 2006