| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,932,816 – 5,932,919 |
| Length | 103 |
| Max. P | 0.784594 |
| Location | 5,932,816 – 5,932,919 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.30 |
| Mean single sequence MFE | -31.88 |
| Consensus MFE | -21.63 |
| Energy contribution | -22.94 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5932816 103 + 22407834 AGCACAACUCGAAUGAGAGUCAG-AGGCGUAAAAGCCGUUGGCCUCAUCAUGUCCGUAGCCACUUGCCACGUCGAAUGGGCGGUAAACA------CACGGACAUGCACAC .((.......((.((((.(((((-.(((......))).)))))))))))((((((((......(((((.(((...))))))))......------.)))))))))).... ( -35.52) >DroSec_CAF1 18668 103 + 1 AGCACAACUCGAAUGAGAGUCAG-AGGCGUAAAAGCCGUUGGCCUCAUCAUGUCCGUAGCCACUUGCCACAUCGAAUGGGCGGUAAACA------CACGGACAUGCACAC .((.......((.((((.(((((-.(((......))).)))))))))))((((((((......(((((.(((...))))))))......------.)))))))))).... ( -35.92) >DroSim_CAF1 17978 103 + 1 AGCACAACUCGAAUGAGAGUCAG-AGGCGUAAAAGCCGUUGGCCUCAUCAUGUCCGUAGCCACUUGCCACGUCGAAUGGGCGGUAAACA------CACGGACAUGCACAC .((.......((.((((.(((((-.(((......))).)))))))))))((((((((......(((((.(((...))))))))......------.)))))))))).... ( -35.52) >DroEre_CAF1 18658 103 + 1 AGCACCACUCGAAUGAGAGUCAG-AGGCAUAAAAGCCGUUGGCCUCAUCAUGUCCGUAGCCACUUUCCACGCCGAACGGGCGGUAAACA------CACGUACAUGUGCAC .((((.....((.((((.(((((-.(((......))).)))))))))))((((.(((............((((.....))))((....)------)))).)))))))).. ( -32.80) >DroWil_CAF1 26217 91 + 1 ---------CGACAAAGAGUCAGCAGGCAUAAAAGCCUUUGGCCUGAAUGUGUGGG---GUACUUUGAGCAUGGGAUGGAAGGCGGAG-------CAUGUCUAGGAACUG ---------.(((.....)))...((((((....((((((.((((..((((..((.---...))....))))))).).))))))....-------.))))))........ ( -23.50) >DroYak_CAF1 18739 109 + 1 AGCACCACUCGAAUGAGAGUCAG-AGGCAUAAAAGCCGGUGGCCUCAUCAUGUUCGUAGCCACUUUCCACGUCGAAUGGGCGGUAGACACACACACACGUCCAUGUACAC .((((.((..((.((((.((((.-.(((......)))..))))))))))..))..)).))..........((...(((((((((..........)).)))))))..)).. ( -28.00) >consensus AGCACAACUCGAAUGAGAGUCAG_AGGCAUAAAAGCCGUUGGCCUCAUCAUGUCCGUAGCCACUUGCCACGUCGAAUGGGCGGUAAACA______CACGGACAUGCACAC ............(((((.((((...(((......)))..)))))))))(((((((((............((((.....))))..............)))))))))..... (-21.63 = -22.94 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:53 2006