Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,932,198 – 5,932,294 |
Length | 96 |
Max. P | 0.500000 |
Location | 5,932,198 – 5,932,294 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.62 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -23.03 |
Energy contribution | -23.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.93 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5932198 96 - 22407834 AAGGAGUGUG----UAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA .....(.(((----(...(((((((......)))...........((.((((.(..(((((..........)))))..).)))))))))))))))..... ( -21.40) >DroSec_CAF1 18059 100 - 1 AAGGCGUGUGUAUGUAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA ..(((((((((.((......((((.....))))......))))))((.((((.(..(((((..........)))))..).))))))....)))))..... ( -26.60) >DroSim_CAF1 17371 96 - 1 AAGGCGUGUG----UAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA ..((((((((----((...((((((......))).....................((((((..........)))))))))...)))))..)))))..... ( -26.50) >consensus AAGGCGUGUG____UAUAUGGCUGCACAUCAGCAAAAAUCAAUACGUUAAAAUGUGGUCAUGAAAUUAGCAGUGACUGCCUUUUGCGCCAGCGCCAAAAA ..(((((...........(((((((......)))...........((.((((.(..(((((..........)))))..).)))))))))))))))..... (-23.03 = -23.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:52 2006