Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,928,951 – 5,929,041 |
Length | 90 |
Max. P | 0.938851 |
Location | 5,928,951 – 5,929,041 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.89 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -12.69 |
Energy contribution | -12.72 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -2.32 |
Structure conservation index | 0.56 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5928951 90 - 22407834 GAGAAUGUUCCUCGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGC--------AUUG--AGCUGUGUU------- (((.......)))..........((((..((((.(((....((((((((((..........))))))))))))).))--------)).)--)))......------- ( -19.70) >DroPse_CAF1 17710 92 - 1 ------UUUCAACGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGCAGCACAGCAUUG--AGCUGUGUA------- ------....(((((......)))))....(((.(((....((((((((((..........))))))))))))).)))(((((((....--.))))))).------- ( -28.80) >DroWil_CAF1 19519 94 - 1 --AAACGUUGUCGGUUGUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGUUGC----CAUUGUCAGUUAAGUU------- --.((((.(((..(((.(((...(((((((.(((((((...))).)))).)))))))..))))))..))).)))).....----................------- ( -17.80) >DroMoj_CAF1 19566 88 - 1 --------CCGACGUUGUCAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGC--------AUUG--AGUUGU-UGUUCGUUU --------(((((((((..((((((......)).)))).))))))))).....((((..(((..(..(((....)))--------...)--..))).-.)))).... ( -20.80) >DroAna_CAF1 15317 85 - 1 -----AGCUCAUCGCAAUAAUGUGUUUUUAUGCUACAUUUAAUUUUAGCUUAAGAGCUUUAAAGCUAGUAUUGUUGU--------AUUG--AGUGGUGAA------- -----.(((((..(((((((((....((((.((((.(......).)))).))))((((....))))..)))))))))--------..))--)))......------- ( -20.40) >DroPer_CAF1 17847 92 - 1 ------UUUCAACGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGCAGCACAGCAUUG--AGCUGUGUA------- ------....(((((......)))))....(((.(((....((((((((((..........))))))))))))).)))(((((((....--.))))))).------- ( -28.80) >consensus ______GUUCAACGCUAUUAUGUGUUUUUAUGCUACAUUUAAUGUUGGCUUAAGAGCUUUAAAGCUAGCAUUGUUGC________AUUG__AGCUGUGUA_______ ...................((((((......)).)))).((((((((((((..........)))))))))))).................................. (-12.69 = -12.72 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:51 2006