| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,913,519 – 5,913,624 |
| Length | 105 |
| Max. P | 0.755968 |
| Location | 5,913,519 – 5,913,624 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.63 |
| Mean single sequence MFE | -36.22 |
| Consensus MFE | -26.34 |
| Energy contribution | -25.49 |
| Covariance contribution | -0.85 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5913519 105 + 22407834 A--------UGCUAAU-CUUUCCAGGUAUUGGUGACUGGGAACCCGAAGGAUCGGAUGACGGUAUCGCUCGCAUAUGGUGUCCUGAUCUUUUGCACGAAGGUCAGUGGCACAAC (--------(((....-.(((((((..........)))))))..(((...((((.....)))).)))...))))...((((((((((((((.....))))))))).)))))... ( -33.30) >DroPse_CAF1 3112 105 + 1 A--------UCUGAUC-CUUUCUAGGCAUUGGCGAUUGGGAGCCAGAGGGAUCUGACGAUGGCAUUGCACGCAUUUGGUGCCCCGAUCUCCUGCACGAGGGCCAGUGGCAUAAU .--------.......-.......(.((((((((((((((.((((..(........)..))))...((((.......))))))))))).(((.....)))))))))).)..... ( -38.90) >DroGri_CAF1 6207 113 + 1 AUUGUAAAUUAUUCAU-AUUUGAAGGCAUUGGCGAUUGGGAGCCGGAGGGCUCUGAUGAUGGCAUUGCCCGCAUCUGGUGUCCAGAUCUGUUGCACGAGGGUCAAUGGCACAAU (((((......((((.-...))))(.(((((((..(((((((((....))))))...........(((.((.((((((...)))))).))..))))))..))))))).)))))) ( -35.20) >DroWil_CAF1 3191 104 + 1 A--------UUCGCAU-AU-UUUAGGCAUUGGCGAUUGGGAACCAGAGGGCUCUGAUGAUGGCAUUGCUCGUAUCUGGUGCCCAGAUCUUCUGCAUGAAGGCCAAUGGCAUAAU .--------.......-..-....(.(((((((..(((((.((((((((((..((.......))..))))...)))))).)))))..((((.....))))))))))).)..... ( -38.00) >DroAna_CAF1 3734 106 + 1 A--------UUCUAUUGAUUUUCAGGCAUUGGCGAUUGGGAGCCAGAAGGAUCUGAUGACGGUAUCGCUCGCAUUUGGUGCCCCGAUCUCUUGCAUGAGGGCCAGUGGCAUAAU .--------...............(.((((((((((((((.((((((((((((((....))).))).))....))))))..)))))))((((....))))))))))).)..... ( -35.20) >DroPer_CAF1 3119 105 + 1 A--------UCUGAUC-CUUUCUAGGCAUUGGCGAUUGGGAGCCAGAGGGAUCUGAUGAUGGCAUUGCACGCAUUUGGUGCCCCGAUCUCCUGCACGAGGGCCAGUGGCAUAAU .--------.......-.......(.((((((((((((((.((((..(........)..))))...((((.......))))))))))).(((.....)))))))))).)..... ( -36.70) >consensus A________UCCGAAU_AUUUCUAGGCAUUGGCGAUUGGGAGCCAGAGGGAUCUGAUGAUGGCAUUGCUCGCAUUUGGUGCCCCGAUCUCCUGCACGAGGGCCAGUGGCAUAAU ........................(.((((((((((((((.((((((.......((((....)))).......))))))..))))))).(((.....)))))))))).)..... (-26.34 = -25.49 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:48 2006