Locus 2188

Sequence ID 2L_DroMel_CAF1
Location 5,911,504 – 5,911,624
Length 120
Max. P 0.720206
window3529

overview

Window 9

Location 5,911,504 – 5,911,624
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -30.98
Consensus MFE -21.19
Energy contribution -22.03
Covariance contribution 0.84
Combinations/Pair 1.46
Mean z-score -1.58
Structure conservation index 0.68
SVM decision value 0.40
SVM RNA-class probability 0.720206
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5911504 120 + 22407834
CAAGGAGCUGAUCAGCCUUUCGCUAUUGCUCAAGCACAACCAGUCGACGUCCUGCAGCAUUCUUUGCUUGAAGACACUGUUAAACAUUCUCCGGCACAACGCUGUAUUUAAAGAUGUCUA
....((((.(((.(((.....))))))))))..............((((((.((((((......((((.((.((...((.....)).)))).))))....))))))......)))))).. ( -24.60)
>DroVir_CAF1 4029 120 + 1
CAAGGAGCUGAUCAGCUUAUCGCUGCUGCUCAAGCACAAUCAAUCGACGUCCUGCAGCAUCCUAUGCCUGAAGACGCUGCUCAACAUUCUGCGCCACAACAGCGUCUUCAAGGAUGUCUA
......(((((.((((........)))).)).)))..........(((((((((((........))).(((((((((((....................))))))))))))))))))).. ( -41.75)
>DroPse_CAF1 1103 120 + 1
CAAGGAGUUGAUCAGCCUUUCGCUGCUCCUCAAGCACAAUCAGUCGACGUCCUGCAGUAUUCUGUGCCUCAAAACCCUCCUGAAUAUCCUACGGCACAAUGCAGUUUUCAAGGAUGUCUA
..(((((.....((((.....)))))))))...............((((((((((.((((..((((((........................)))))))))).)).....)))))))).. ( -29.66)
>DroGri_CAF1 4094 120 + 1
UAAGGAGCUCAUCAGUUUGUCGCUACUGCUCAAGCACAAUCAAAGUACCUCAUGCAGCAUUCUGUGCCUCAAGACGCUGCUCAACAUAUUGCGCCACAAUAGCGUGUUCAAGGACGUCUA
...(((........(((((..((....)).))))).........((.(((...(((((..(((........))).)))))..........((((.......)))).....))))).))). ( -23.70)
>DroWil_CAF1 1163 120 + 1
UAAGGAGUUGAUUAGUUUAUCUUUGCUGCUUAAACACAAUCAAUCGACAUCGUGCAGCAUUCUUUGCCUAAAGACACUCUUGAACAUUCUACGGCAUAAUAGUGUCUUUAAAGAUGUCUA
((((.(((.(((......)))...))).)))).............((((((.....(((.....))).((((((((((.(((..(........)..))).))))))))))..)))))).. ( -28.80)
>DroMoj_CAF1 3941 120 + 1
CAAGGAGCUAAUCAGCUUAUCUCUGCUGCUCAAACACAAUCAGUCGACGUCGUGCAGCAUCCUCUGCAUGAAGACGCUGCUCAACAUUCUGCGCCACAAUAGCGUCUUCAAGGAUGUCUA
....((((.....(((........)))))))..............((((((((((((......))))))(((((((((((.((......)).))......)))))))))...)))))).. ( -37.40)
>consensus
CAAGGAGCUGAUCAGCUUAUCGCUGCUGCUCAAGCACAAUCAAUCGACGUCCUGCAGCAUUCUGUGCCUGAAGACGCUGCUCAACAUUCUGCGCCACAAUAGCGUCUUCAAGGAUGUCUA
....((((....((((.....))))..))))..............((((((.....(((.....))).(((((((((((....................)))))))))))..)))))).. (-21.19 = -22.03 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:47 2006