Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,909,990 – 5,910,110 |
Length | 120 |
Max. P | 0.753554 |
Location | 5,909,990 – 5,910,110 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -45.21 |
Consensus MFE | -28.12 |
Energy contribution | -29.52 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.39 |
Mean z-score | -1.60 |
Structure conservation index | 0.62 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5909990 120 - 22407834 GUCCUUUACGGCGCUCGCCGCUCUAGGCGCGUUCCGACUGCUAUUGGCUAGGAGUACGGUGCUCUCCUCCCAGCUCCUGCUCACACUGAGUGCCGUGCUGUCGCACUAUUUCUGCGGCGU .((((...(((.((.((((......)))).)).)))...((.....)).))))((((((..(((.......(((....)))......)))..)))))).((((((.......)))))).. ( -47.62) >DroPse_CAF1 207394 120 - 1 CUCCUACACUCUCCUGGCCGCCUUGGGUGCCUUCCGACUGCUGCUGAAAAAGAGUUCGAUACUGUCAUCAGAGCUACUGCUCGCCGCCAGUGCCAUGGGCUUGCACUAUUUCUGUGGCCU ...............((((((....(((((......(((((.(((((...(.(((.....))).)..)))((((....)))))).).))))(((...)))..)))))......)))))). ( -34.00) >DroSec_CAF1 100427 120 - 1 GUCCUUCACGGCGCUCGCAGCUCUAGGCGCGUUUCGACUGGUGCUGGCUAGGAGUACGGUGCUGUCCUCCCAGCUCCUGCUCACACUGAGCGCCGUGCUGUCGCACUACAUUUGCGGCGU ......((((((((((.((((.((((.((.....)).)))).)))).....(((((.((.((((......)))).))))))).....))))))))))..((((((.......)))))).. ( -55.50) >DroEre_CAF1 125150 120 - 1 GUCAUUCACGGCGCUCGCCGCUCUAGGUGCGUUCCGGCUGAUCCUAGCUAGGAGUUCGGUGCUCUCCUCCCAGCUUCUGCUCACACUGAGUGCCGUGCUGGCGCACUACUCCUGCGGCGU (((......)))...((((((....(((((((((((((((....))))).)))((.(((..(((.......(((....)))......)))..))).))..)))))))......)))))). ( -47.82) >DroYak_CAF1 126229 120 - 1 CUCCUUCACGGCACUCGCCGCUCUAGGUGCGUUCCGGCUGAUGCUGGCUAGGAGUUCGGUGCUCUCCUCCCAGCUUCUGCUCACACUGAGUGCCGUGCUGUCGCACUACUUCUGCGGCGU ......(((((((((((((......)))..((...(((.((.(((((..(((((.........))))).))))).)).)))...)).))))))))))..((((((.......)))))).. ( -50.40) >DroPer_CAF1 207339 120 - 1 CUCCUACACUCUCCUGGCCGCCUUGGGUGCCUUCCGACUGCUGCUGAAAAAGAGCUCGAUACUGUCAUCAGAGCUACUGCUCGCCGCCAGUGCCAUGGGCUUGCACUAUUCCUGUGGCCU ...............((((((....(((((......(((((.((.((...((((((((((......))).))))).))..)))).).))))(((...)))..)))))......)))))). ( -35.90) >consensus CUCCUUCACGGCGCUCGCCGCUCUAGGUGCGUUCCGACUGCUGCUGGCUAGGAGUUCGGUGCUCUCCUCCCAGCUACUGCUCACACUGAGUGCCGUGCUGUCGCACUACUUCUGCGGCGU ......(((((((((((((......)))................(((.((((((((.((.........)).)))))))).)))....)))))))))).(((((((.......))))))). (-28.12 = -29.52 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:46 2006