Locus 2186

Sequence ID 2L_DroMel_CAF1
Location 5,909,830 – 5,909,950
Length 120
Max. P 0.542307
window3527

overview

Window 7

Location 5,909,830 – 5,909,950
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.56
Mean single sequence MFE -36.03
Consensus MFE -23.94
Energy contribution -25.25
Covariance contribution 1.31
Combinations/Pair 1.22
Mean z-score -1.66
Structure conservation index 0.66
SVM decision value 0.02
SVM RNA-class probability 0.542307
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5909830 120 - 22407834
UUCAUCAAUUCUACCAUCGAGUAUCUGGAACAUCCGCACUUUGCGCACUGCAAGCAGCAGAGCAUCGCUGCGCUGGUUACUGGCACCAUGUACCUGAUGCACAUGUUCCACGUGUUCGAC
................((((((((.((((((((..(((....((((.((((.....))))(((...))))))).(((.((((....)).)))))...)))..)))))))).)))))))). ( -37.50)
>DroPse_CAF1 207234 120 - 1
GCCAUGAAUUCCACGUGGCAGUAUCUGGAGCAUCCGCAUUUUGCGCGCUGCAAGAGACAGAGCAUUGGGGCGUUGAUUACGGGCACUAUGUAUCUGAUGCACAUGUUCCUGCUGCUCGAU
((((((.......)))))).((.((((.(((...(((.....))).))).).))).)).(((((..(((((((((....(((..((...))..)))...)).)))))))...)))))... ( -37.90)
>DroSec_CAF1 100267 120 - 1
UUCAUCAAUUCUACCAUCGAGUACCUGGAACAUCCGCACUUUGCGCACUGCAAGAGGCAGAGCAUCGCUGCACUGGUUACUGGCACCAUGUACUUGAUGCACAUGUUCCACGUUUUCGAC
................(((((.((.((((((((.(((.....)))..((((.....)))).((((((.((((.((((.......))))))))..))))))..)))))))).)).))))). ( -37.50)
>DroEre_CAF1 124990 120 - 1
UCCAUCAAUUCCACCAUCGAGUACCUGGAGCACCCGCACUUCGCGCACUGCAAACAGAAGAGCAUCGCUGCUCUAAUUACUGGCACCAUGUACCUGAUGCACAUGUUCCAUGUGUUCGAC
................((((((((.(((((((..(((.....)))...((((..(((.((((((....))))))...(((((....)).))).))).))))..))))))).)))))))). ( -34.20)
>DroYak_CAF1 126069 120 - 1
UCCAUCAAUUCCACCAUCGAGUACCUGGAACACCCGCACUUCGCAUACUGCAAGCAGAAGAGCAUCGCUGCACUUAUCACUGGCACCAUGUACCUGAUGCACAUGUUCCACGUGUUCGAU
...............(((((((((.(((((((...((((...((((..(((.((...(((.(((....))).)))....)).)))..))))....).)))...))))))).))))))))) ( -31.20)
>DroPer_CAF1 207179 120 - 1
GCCAUGAAUUCCACGUGGCAGUAUCUGGAGCAUCCGCAUUUUGCGCGCUGCAAGAGACAGAGCAUUGGGGCGUUGAUUACGGGCACUAUGUAUCUGAUGCACAUGUUCCUGCUGCUCGAU
((((((.......)))))).((.((((.(((...(((.....))).))).).))).)).(((((..(((((((((....(((..((...))..)))...)).)))))))...)))))... ( -37.90)
>consensus
UCCAUCAAUUCCACCAUCGAGUACCUGGAACAUCCGCACUUUGCGCACUGCAAGAAGCAGAGCAUCGCUGCGCUGAUUACUGGCACCAUGUACCUGAUGCACAUGUUCCACGUGUUCGAC
................((((((((.((((((((..((((..((((...(((......(((.((......)).))).......)))...))))...).)))..)))))))).)))))))). (-23.94 = -25.25 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:45 2006