Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,902,080 – 5,902,220 |
Length | 140 |
Max. P | 0.991585 |
Location | 5,902,080 – 5,902,188 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.68 |
Mean single sequence MFE | -32.04 |
Consensus MFE | -18.29 |
Energy contribution | -22.42 |
Covariance contribution | 4.13 |
Combinations/Pair | 1.00 |
Mean z-score | -2.36 |
Structure conservation index | 0.57 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5902080 108 - 22407834 CCCCUGCCUCAAAGUUCAAUUGUUUGCGGCGAAGUCGCCAGUUUUUCCAU--GGGUCAGUCCCC-GUGGAAAAGCGUU-CCUCAAAAAUCCGACAAUUGCUCCGCGA-AAUCA .............(..((((((((...((((....)))).((((((((((--(((......)))-))))))))))...-............))))))))..).....-..... ( -34.70) >DroSim_CAF1 93033 103 - 1 --------UCAAAGUUCAAUUGUUCGCGGCGAAGUCGCCAGUUUUUCCAUGAGGGUCAGUUCCCGGUGGAAAAGCGUU-CCUCAAAAAUCCGACAAUUGCUGCGCGA-AAUCA --------.....((.(((((((.((.((((....)))).((((((((((..(((......))).))))))))))...-...........)))))))))..))....-..... ( -34.30) >DroEre_CAF1 116947 97 - 1 CAACCGCUUCAAAGUUCAAUUGUUGGCCGC-----------UUUUUCCAU--GGGUCAGUCCCC-GCGGAAAAGCGUU-CCUCAAAAAUCCGACAAUUGCUGCGCGA-AAUCA ....(((.....((..((((((((((.(((-----------((((.((.(--(((......)))-).)))))))))..-..........))))))))))))..))).-..... ( -27.72) >DroYak_CAF1 117875 108 - 1 CACCCGCUUCAAAGUUCAAUUGUUGGCGGCGAAGUCGCCAGUUUUUCCAU--GGGUCAGUCCCC-GUGGAAAAGCGUU-CCUCAAAAAUCCGACAAUUGCUGCGCGA-AAUCA ....(((.....((..((((((((((.((((....)))).((((((((((--(((......)))-))))))))))...-..........))))))))))))..))).-..... ( -42.50) >DroAna_CAF1 92846 89 - 1 GACAUACUUGAGAGUUCAAUUGUGGGCUGAGAAGC-------UGUUGCA-----------------UGGCAAAGCGUUUUCACAAAAUACCGCCAAUUGCCUGGCGAAAAUCA ..((((.(((......))).))))...((((((((-------(.((((.-----------------..))))))).))))))........(((((......)))))....... ( -21.00) >consensus CACCCGCUUCAAAGUUCAAUUGUUGGCGGCGAAGUCGCCAGUUUUUCCAU__GGGUCAGUCCCC_GUGGAAAAGCGUU_CCUCAAAAAUCCGACAAUUGCUGCGCGA_AAUCA ................((((((((((.((((....)))).(((((((((((.(((.....))).)))))))))))..............)))))))))).............. (-18.29 = -22.42 + 4.13)
Location | 5,902,112 – 5,902,220 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.73 |
Mean single sequence MFE | -39.00 |
Consensus MFE | -28.96 |
Energy contribution | -30.02 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.09 |
Mean z-score | -2.26 |
Structure conservation index | 0.74 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.852967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5902112 108 - 22407834 GGUGGCUGCUAGAGCUUU-UGCAUGAGACUUUUCCCCUGCCUCAAAGUUCAAUUGUUUGCGGCGAAGUCGCCAGUUUUUCCAU--GGGUCAGUCCCC-GUGGAAAAGCGUUC (((((((....(((((((-.(((.(.((....)).).)))...)))))))..((((.....))))))))))).((((((((((--(((......)))-)))))))))).... ( -41.20) >DroSim_CAF1 93065 99 - 1 GUUGGCUGCUAGAGCUUU-UGCAUGAGAC------------UCAAAGUUCAAUUGUUCGCGGCGAAGUCGCCAGUUUUUCCAUGAGGGUCAGUUCCCGGUGGAAAAGCGUUC ..((((.(((.((((((.-.....))).)------------)).........((((.....))))))).))))((((((((((..(((......))).)))))))))).... ( -32.30) >DroYak_CAF1 117907 109 - 1 GGCUGCUGCCAGAGGUUCCAGCAUGAGACUUUUCACCCGCUUCAAAGUUCAAUUGUUGGCGGCGAAGUCGCCAGUUUUUCCAU--GGGUCAGUCCCC-GUGGAAAAGCGUUC ((((((((((...))...)))))...((((((....(((((.(((.......)))..))))).))))))))).((((((((((--(((......)))-)))))))))).... ( -43.50) >consensus GGUGGCUGCUAGAGCUUU_UGCAUGAGACUUUUC_CC_GC_UCAAAGUUCAAUUGUUCGCGGCGAAGUCGCCAGUUUUUCCAU__GGGUCAGUCCCC_GUGGAAAAGCGUUC ((((((((((.((((((......((((.............))))))))))....(....))))..))))))).(((((((((((.(((.....))).))))))))))).... (-28.96 = -30.02 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:42 2006