Locus 2182

Sequence ID 2L_DroMel_CAF1
Location 5,899,444 – 5,899,549
Length 105
Max. P 0.650539
window3520

overview

Window 0

Location 5,899,444 – 5,899,549
Length 105
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 70.48
Mean single sequence MFE -22.45
Consensus MFE -11.15
Energy contribution -12.77
Covariance contribution 1.62
Combinations/Pair 1.32
Mean z-score -1.58
Structure conservation index 0.50
SVM decision value 0.24
SVM RNA-class probability 0.650539
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5899444 105 - 22407834
CCGAUUGCCCGAUUCUCCAGUCUCCCGCAUCUCGC-----CCCUCGGCUCCUC---CAUUGGCACACACAGAAAUUGUUUUGAAAACUUGCUGACUUUUCAAUUGGGCAAUAC
...(((((((((((....((((....(((....((-----(....((.....)---)...))).....(((((....)))))......))).))))....))))))))))).. ( -26.40)
>DroSec_CAF1 89225 101 - 1
CCGAUUGCCCGAUUCUCCAGUC----GAUUCUCCCC----CCUUCAACUCCUC---CGUUGG-ACACACAGAAAUUGUUCUGAAAACUUGCUGAGUUUUCAAUUGGGCAAUAC
...(((((((((((....((.(----((((((....----..((((((.....---.)))))-).....)).)))))..))((((((((...))))))))))))))))))).. ( -27.20)
>DroSim_CAF1 90409 101 - 1
CCGAUUGCCCGAUUCUCCAGUC----GAUUCUCCC-----CCUUCAACUCCUC---CGUUGGCACACACAGAAAUUGUUUUAAAAACUUGCUGAGUUUUCAAUUGGGCAAUAC
...(((((((((((...((((.----..((((...-----...(((((.....---.))))).......)))))))).....(((((((...))))))).))))))))))).. ( -20.92)
>DroEre_CAF1 114482 105 - 1
CCGAUUACCCGACUCUCC------UCCAGCCUCCGCAGAUCUCUCAGCUCCACCGCCGCUGGC--ACACAGAAAUUGUUUUGAAAACUUGCUGAGUUUUCAAUUGGGCAAUAC
...(((.(((((......------....((....)).((...((((((......(((...)))--...(((((....))))).......))))))...))..))))).))).. ( -23.00)
>DroAna_CAF1 90755 95 - 1
UCGGA-GCCCAGCCAACCACUC----GUUGAU--------GCUUUGACUUCUU---CGGUGGC--GCAUAUAAAUUGUUUUGAAAACUUGCUGAGUUUUCAAUCGAGCACUAC
(((((-((.((((.........----))))..--------)))))))......---..((((.--((.......(((..((((((((((...)))))))))).))))).)))) ( -20.81)
>DroPer_CAF1 191936 90 - 1
CCUGGCACC------ACCA---------AUCUUCC-----UCUACUGCUUCUU---CGAUGGCACACACAAAAAUUGUUUUGGAAACUUGCUGAGUUUUCAAUUGAGGCACAA
..(((....------.)))---------.....((-----((...((((....---....))))...............((((((((((...))))))))))..))))..... ( -16.40)
>consensus
CCGAUUGCCCGAUUCUCCAGUC____GAUUCUCCC_____CCUUCAACUCCUC___CGUUGGCACACACAGAAAUUGUUUUGAAAACUUGCUGAGUUUUCAAUUGGGCAAUAC
...(((((((((..............................................(((.......)))........((((((((((...))))))))))))))))))).. (-11.15 = -12.77 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:38 2006