Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,897,918 – 5,898,013 |
Length | 95 |
Max. P | 0.874651 |
Location | 5,897,918 – 5,898,013 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.45 |
Mean single sequence MFE | -37.67 |
Consensus MFE | -30.04 |
Energy contribution | -30.66 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.08 |
Mean z-score | -2.10 |
Structure conservation index | 0.80 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5897918 95 + 22407834 CGGCAUUUGGACUGC--CACAAUGGCCCCCAGAUGCUGCCACCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGAAAAAGCAGCCAAACUGGCAUAGA .(.(((((((.((((--......(((.((.(((((((.(((((....)))))..))))))).))...)))........))))))))).)).)..... ( -38.64) >DroSec_CAF1 87674 95 + 1 CCUGAGUUGGACUGC--CACAAUGGCCCCCAGAUGCUGCCGCCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGAAAAAGCAGCCAAACAGGCAUAGA ((((..((((.((((--......(((.((.(((((((.(((((....)))))..))))))).))...)))........)))))))).))))...... ( -39.34) >DroSim_CAF1 88921 97 + 1 CCUGAGUUGGACUGCCCCACAAUGGCCCCCAGAUGCUGCCGCCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGCAAAAGCAGCCAAACUGGCAUAGA .(((.(((((.(((((((.....)).....(((((((.(((((....)))))..))))))).)))).).))))).......(((.....))).))). ( -37.00) >DroYak_CAF1 113695 95 + 1 CGGCAGUUGCACUGC--CACAAUGGCCCCCAGUUGAUGCCGCCACGAGGUGGGAGGCGUCGCGGCACGCCCAGCAAAAGCAGCCAAACUGGCUCAGA .(((((.....))))--)....(((...((((((((((((.((((...))))..))))))..(((..((.........)).))).)))))).))).. ( -35.70) >consensus CCGCAGUUGGACUGC__CACAAUGGCCCCCAGAUGCUGCCGCCAUGAGGUGGGAGGCAUCUCGGCACGCCCAGAAAAAGCAGCCAAACUGGCAUAGA ......((((.((((........(((.((.(((((((.(((((....)))))..))))))).))...)))........))))))))........... (-30.04 = -30.66 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:37 2006