Locus 2180

Sequence ID 2L_DroMel_CAF1
Location 5,897,640 – 5,897,734
Length 94
Max. P 0.914179
window3518

overview

Window 8

Location 5,897,640 – 5,897,734
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 92.48
Mean single sequence MFE -24.19
Consensus MFE -19.82
Energy contribution -20.06
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.82
SVM decision value 1.09
SVM RNA-class probability 0.914179
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5897640 94 + 22407834
ACACCCACUGCCACACUCGUAGUUAGCAUCCGUGCAAUUUGCGAGAUAAAGACCAAUCGCAAUAUUACUGGCUGGCAUGUGGAAAGUUGCAAAU
....((((((((...(((((((...(((....)))...)))))))....((.(((.............))))))))).))))............ ( -25.62)
>DroSec_CAF1 87407 93 + 1
ACACCCACUGCCACACUCGUAG-UAGCAUCCGUGCAAUUUGCGAGAUAAAGACCAAUCGCAAUAUUACUGCCUGGCAUGUGGAAAGUUGCAAAU
....(((((((((.....((((-(((((....)))...((((((............))))))...)))))).))))).))))............ ( -26.80)
>DroSim_CAF1 88654 93 + 1
ACACCCACUGCCAUACUCGUAG-UAGCAUCCGUGCAAUUUGCGAGAUAAAGACCAAUCGCAAUAUAACUGGCUAGCAUGUGGAAAGUUGCAAAU
....(((((((....(((((((-..(((....)))...)))))))....((.(((.............))))).))).))))............ ( -21.32)
>DroEre_CAF1 112952 90 + 1
ACACCCACUGCCAUACUCGU----AGCACUCGUGCAAUUUGUGUGAUAAAGAGCAAUCGCAAUAUUAUUUGCUGGCAUGUGGAAAGUUGCAAAU
....(((((((((..(((..----..(((.((.......)).))).....))).....((((......))))))))).))))............ ( -23.30)
>DroYak_CAF1 113415 90 + 1
ACACCCACUGCCACACUCGU----AGCAUCCGUGCAAUUUGCGAGAUAAAGAGCAAUCGCAAUAUUACUGGCUGGCAUGUGGAAAGUUGCAAAU
....(((((((((..((.((----((((....)))...((((((............))))))...))).)).))))).))))............ ( -23.90)
>consensus
ACACCCACUGCCACACUCGUAG_UAGCAUCCGUGCAAUUUGCGAGAUAAAGACCAAUCGCAAUAUUACUGGCUGGCAUGUGGAAAGUUGCAAAU
....(((((((((............(((....)))...((((((............))))))..........))))).))))............ (-19.82 = -20.06 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:34 2006