Locus 218

Sequence ID 2L_DroMel_CAF1
Location 623,488 – 623,608
Length 120
Max. P 0.895172
window341

overview

Window 1

Location 623,488 – 623,608
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -41.98
Consensus MFE -39.74
Energy contribution -39.66
Covariance contribution -0.08
Combinations/Pair 1.05
Mean z-score -1.41
Structure conservation index 0.95
SVM decision value 0.99
SVM RNA-class probability 0.895172
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 623488 120 - 22407834
UUCUGCCUGUGAGUCGCUUUUUCGAGGUAAUCUCUUGGCUGUCGUUUGCACGGCGCUAAUUAUCUCUGCUAAUGAUGCUUUAAAAGGCAGUCGGCGACGACAGGCGGUCCAGCGGCAGCG
..((((((((..((((((.....((((((((....((((.(((((....))))))))))))))))).......(((((((....))))).)))))))).))))))))....((....)). ( -45.50)
>DroSec_CAF1 12711 120 - 1
UUCUGCCUGUGAGUCGCUUUUUCGAGGUAAUCUCUUGGCUGUCGUUUGCACGGCGCUAAUUAUCUCUGCUAAUGAUGCUUUAAAAGGCAGUCGGCGACGACAGGCGGUCCAGCGGCAGCG
..((((((((..((((((.....((((((((....((((.(((((....))))))))))))))))).......(((((((....))))).)))))))).))))))))....((....)). ( -45.50)
>DroSim_CAF1 12276 120 - 1
UUCUGCCUGUGAGUCGCUUUUUCGAGGUAAUCUCUUGGCUGUCGUUUGCACGGCGCUAAUUAUCUCUGCUAAUGAUGCUUUAAAAGGCAGUCGGCGACGACAGGCGGUCCAGCGGCAGCG
..((((((((..((((((.....((((((((....((((.(((((....))))))))))))))))).......(((((((....))))).)))))))).))))))))....((....)). ( -45.50)
>DroEre_CAF1 16360 120 - 1
UUCUGUCUGUGAGUCUCUUUUUCGAGGUAAUCUCUUGGCUGUCGUUUGCACGGCGCUAAUUAUCUCUGCUAAUGAUGCUUUAAAAGGCAGUCGUCGACGACAGGCGGUCCAGCGGCAGCG
..((((((((..(((........((((((((....((((.(((((....))))))))))))))))).....(((((((((....))))).)))).))).))))))))....((....)). ( -37.50)
>DroYak_CAF1 15317 120 - 1
UUCUGUCUGUGAGUCUCUUUUUCGAGGUAAUCUCUUGGCUGUCGUAUGCACGGCGCUAAUUAUCUCUGCUAAUGAUGCUUUAAAAGGCAGUCGUCGACGACAGGAGGUCCAGCUGCAGCG
..(((((((.((.((((((....((((((((....((((.(((((....))))))))))))))))).........(((((....)))))((((....)))))))))))))))..)))).. ( -35.90)
>consensus
UUCUGCCUGUGAGUCGCUUUUUCGAGGUAAUCUCUUGGCUGUCGUUUGCACGGCGCUAAUUAUCUCUGCUAAUGAUGCUUUAAAAGGCAGUCGGCGACGACAGGCGGUCCAGCGGCAGCG
..(((((..((..((((((....((((((((....((((.(((((....))))))))))))))))).........(((((....)))))((((....))))))))))..))..))))).. (-39.74 = -39.66 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:13 2006