| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,895,446 – 5,895,549 |
| Length | 103 |
| Max. P | 0.829957 |
| Location | 5,895,446 – 5,895,549 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 81.27 |
| Mean single sequence MFE | -31.87 |
| Consensus MFE | -20.79 |
| Energy contribution | -22.93 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5895446 103 - 22407834 CCG----GGCAUGCUAAUCCGGAAGUAGGUCAUUUUCCGAACGCAAAUGAAAGCGUGAGCUCAGCUCGAACUCGGGCUGAAAAGCGAUGAAAAUCGUAGUGAUGAAU .((----..((((((....((((((........)))))).((((........)))).)))((((((((....))))))))...(((((....))))).))).))... ( -33.30) >DroSec_CAF1 85204 103 - 1 CCG----GGCAUGCUAAUCCGGAAGUAGGUCAUUUUCCGAACGCAAAUGAAAGCGUGAGCUCAGCUCGAACUCGGGCUGAAAAGCGAUGAAAAUCGUAGUGAUGAAU .((----..((((((....((((((........)))))).((((........)))).)))((((((((....))))))))...(((((....))))).))).))... ( -33.30) >DroSim_CAF1 86309 103 - 1 CCG----GGCAUGCUAAUCCGGAAGUAGGUCAUUUUCCGAACGCAAAUGAAAGCGUGAGCCCAGCUCGAACUCGGGCUGAAAAGCGAUGAAAAUCGUAGUGAUGAAU ..(----(((.........((((((........)))))).((((........))))..))))((((((....)))))).....(((((....))))).......... ( -34.90) >DroEre_CAF1 110899 87 - 1 CGG----GGCAUGCUAAUCCGGAAGUAGGUCAUUUUCCGAACGCAAAUGAAAGCGUGUGCUCCGC---------GGCUGAAAAGCGAUGAAAAU-------ACAUAC (((----(((((((.....((((((........))))))...((........)))))))))))).---------.(((....))).........-------...... ( -28.00) >DroYak_CAF1 111160 103 - 1 CCG----GGCAUGCUAAUCCGGAAGUAGGUCAUUUUCCGAACGCAAAUGAAAGCGUGUGCUCCGGCCGAACUCGGUCUGAAAAGCGAUGAAAAUCGUAGAAACAUAC ..(----(((((((.....((((((........))))))...((........)))))))).))(((((....)))))......(((((....))))).......... ( -32.50) >DroMoj_CAF1 169824 94 - 1 CCGGCGGAGCAUGUUAAUCCGGAAGUGGGUCAUUUUCCGAACGCAAAUGAAAGCGUGAGCGGG--------ACUGACUGCGAACCGUUGAAAAUCAUCGUAA----- .((((((.(((.((((.((((((((((...)))))))((.((((........))))...))))--------).)))))))...)))))).............----- ( -29.20) >consensus CCG____GGCAUGCUAAUCCGGAAGUAGGUCAUUUUCCGAACGCAAAUGAAAGCGUGAGCUCAGCUCGAACUCGGGCUGAAAAGCGAUGAAAAUCGUAGUGAUGAAU ........((.........((((((........)))))).((((........))))..))((((((((....))))))))...(((((....))))).......... (-20.79 = -22.93 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:33 2006