Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,893,741 – 5,893,836 |
Length | 95 |
Max. P | 0.535278 |
Location | 5,893,741 – 5,893,836 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.34 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -12.56 |
Energy contribution | -13.36 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.30 |
Mean z-score | -1.83 |
Structure conservation index | 0.51 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5893741 95 - 22407834 UAAGUUGACUUAUGCAUUUUUGAGCACAUUUAAGAACGAGUAUC------UUUUCGUUUAGUGCUGCUUUUUACAGUGGCAAGCUGCGAUAGUGA----GCAACA ...((((.(((((......((((((........(((((((....------..)))))))..(((..((......))..))).))).)))..))))----))))). ( -25.90) >DroSec_CAF1 83593 95 - 1 UAAGUUGGCUUAUGCAAUUUUGAGCACAUUUAAGAACGAGUAUC------UUUUCGUUUAGUGCUGCUUUUUACAGUGGCAAACUGCGAUGGUGA----GCACCA (((((..(((((........)))))..))))).(((((((....------..))))))).((((((((..(..((((.....))))..).))).)----)))).. ( -24.80) >DroSim_CAF1 84699 95 - 1 UAAGUUGGCUUAUGCAAUUUUGAGCACAUUUAAGAACGAGUAUC------UUUUCGUUUAGUGCUGCUUUUUGCAGUGGCAAAUUGCGAUGGUGA----GCACCA (((((..(((((........)))))..))))).(((((((....------..))))))).((((((((..(((((((.....))))))).))).)----)))).. ( -27.70) >DroEre_CAF1 109340 94 - 1 UAAGUUCGCCUAUGCAAUCUUAGCCACUUUUAAAAACAAGUAUU-------UUUUGUUUAGUGCUGCAUUUUGCAGUGGCCAACUGUAUAG----GAAUCCAGCA ...(((..((((((((......(((........(((((((....-------.)))))))...(((((.....))))))))....)))))))----).....))). ( -25.00) >DroYak_CAF1 109478 104 - 1 UAAGUUCACUUAUGAAAUUUUGAGCACUUUUAAAAACGAGUAUUUCUGUAUUUUUGUUUAGUGGUGCUUUUUACAGUGGCAAACUGUCAAGCUUUGAAGCCAGC- ((((....))))(((......(((((((.(((((...((((((....))))))...))))).)))))))....((((.....))))))).(((....)))....- ( -20.10) >consensus UAAGUUGGCUUAUGCAAUUUUGAGCACAUUUAAGAACGAGUAUC______UUUUCGUUUAGUGCUGCUUUUUACAGUGGCAAACUGCGAUGGUGA____GCACCA ((((....))))(((......(((((((((...(((((((............))))))))))).))))).(((((((.....)))))))..........)))... (-12.56 = -13.36 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:32 2006