Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,883,217 – 5,883,442 |
Length | 225 |
Max. P | 0.690080 |
Location | 5,883,217 – 5,883,322 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.95 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -19.67 |
Energy contribution | -20.39 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.10 |
Mean z-score | -2.06 |
Structure conservation index | 0.73 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5883217 105 + 22407834 CCGUCUAUACUACAUGGGAAAGUCAGUGCCCAUGAAUUCUACUAAGAAAAUAUUUCGUUGGAGCCCAGAACUUAUGGGUAUAGGUUUCUUUAAUAAACUUGGAAA ...((((........((((((.((.((((((((((.((((.(((((((.....))).)))).....)))).)))))))))).)))))))).........)))).. ( -23.53) >DroSec_CAF1 73159 105 + 1 CCGUCUAUACUACAUGGGAAAGUCAGUGCCCAUGAAUUCCACUAAAAAAAUAUUGUGUUGGGGCACAGAACUUAUGGGUAUGGGUUUCUUUAAUAAACUUGAAAA ...((((((((.((((((....((.((((((........(((............)))...)))))).)).))))))))))))))..................... ( -24.40) >DroSim_CAF1 74004 105 + 1 CCGUCUAUACUACAUGGGAAAGUCAGUGCCCAUGAAUUCUACUAAGAAAAUAUUGUGUUGGGGCACAGAACUCAUGGGUAUGGGUUUCUUUAAUAAACUUGGAAA ...((((........((((((.(((.(((((((((.((((....))))....((((((....))))))...)))))))))))).)))))).........)))).. ( -30.13) >DroEre_CAF1 96972 105 + 1 CCGUCUAUACUGCAUGAGAAACCCAGAGCCCAUGAGUUCUACUAAGAAAAUAUUGAGUUGCGGCACAGAAAUGAUGGGUAUGGGUUUCUUUAAUAAACUUGGAAA ...((((........((((((((((..((((((...((((....)))).................((....)))))))).)))))))))).........)))).. ( -28.73) >DroYak_CAF1 98826 105 + 1 CCGUCUAUACUACAUGAGAAACGCAGUGCCCAUGAAUUCUACUCAGAAAAUAUUAAGUUGGGCCACAGAAAUUAUGGGUAUGGGUUUCUUUAAUAAACUUGGAAA ...((((........(((((((.((.(((((((((.((((.(((((...........)))))....)))).))))))))))).))))))).........)))).. ( -28.63) >consensus CCGUCUAUACUACAUGGGAAAGUCAGUGCCCAUGAAUUCUACUAAGAAAAUAUUGAGUUGGGGCACAGAACUUAUGGGUAUGGGUUUCUUUAAUAAACUUGGAAA ...((((........((((((.(((.(((((((((.((((........(((.....))).......)))).)))))))))))).)))))).........)))).. (-19.67 = -20.39 + 0.72)
Location | 5,883,322 – 5,883,442 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -30.81 |
Consensus MFE | -26.03 |
Energy contribution | -25.95 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.35 |
Structure conservation index | 0.84 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5883322 120 - 22407834 CAUAUUGCCCACGCUCCUACUCUCCGUCAAAACAAAUAACUUUUCCAAUGAUUGUAUGGCUUUUACUGCUUUCCAUAUUCCGUGUGGAGUUGCGGAGUUUACUGAGCGCUGUGCGUUGCA ......((.(((((((.....((((((((..((((................)))).)))).......((.((((((((...))))))))..))))))......))))).)).))...... ( -29.49) >DroSec_CAF1 73264 120 - 1 CAUAUCGCCCACGCUCCUACUCUCCGUCAAAACAAAUAACUUUUCCAAUGAUUGUAUGGCUUUUACUGCUUUCCAUAUUCCGUGUGGAGUUGCGGAGUUUACGGAGCGUUGUGCGUUGCA .....((((.(((((((((..((((((((..((((................)))).)))).......((.((((((((...))))))))..))))))..)).))))))).).)))..... ( -35.99) >DroSim_CAF1 74109 120 - 1 CAUAUCGCCCACGCUCCUACUCUCCGUCAAAACAAAUAACUUUUCCAAUGAUUGUAUGUCUUUUACUGCUUUCCAUAUUCCGUGNGGAGUUGCGGAGUUUACGGAGCGUUGUGCGUUGCA .....((((.(((((((((..((((((......................((..(((.((.....)))))..))...(((((....))))).))))))..)).))))))).).)))..... ( -31.70) >DroEre_CAF1 97077 120 - 1 CAUAUCGCCCACGCUCCUACGCCCCGUCAAAACAAAUAACUUUUCCAAUGAUUGUAUGGCUUUUACUGCUUUCCAUAUUCCGUGUGGAGUUGCAGAGUUUACUGAGCGCUGUGCGUUGCA .....(((.(((((((....((((.((((....(((.....)))....)))).)...))).....((((.((((((((...))))))))..))))........))))).)).)))..... ( -29.60) >DroYak_CAF1 98931 120 - 1 CAUAUUGCCCACGCUCCCACUCUCCGUCAAAACAAAUAACUUUUCCAAUGAUUGUAUGGCUUUUACUGCUUUCCAUAUUCCGUGUGGAGUUGCAGAGUUUACCGAGCGCUGUGCGCUGCA ......((.(((((((.........((((..((((................)))).)))).....((((.((((((((...))))))))..))))........))))).)).))...... ( -27.29) >consensus CAUAUCGCCCACGCUCCUACUCUCCGUCAAAACAAAUAACUUUUCCAAUGAUUGUAUGGCUUUUACUGCUUUCCAUAUUCCGUGUGGAGUUGCGGAGUUUACGGAGCGCUGUGCGUUGCA .....(((.(((((((.........((((..((((................)))).)))).....((((.((((((((...))))))))..))))........))))).)).)))..... (-26.03 = -25.95 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:31 2006