Locus 2176

Sequence ID 2L_DroMel_CAF1
Location 5,881,389 – 5,881,501
Length 112
Max. P 0.715641
window3513

overview

Window 3

Location 5,881,389 – 5,881,501
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.30
Mean single sequence MFE -30.20
Consensus MFE -16.74
Energy contribution -18.06
Covariance contribution 1.32
Combinations/Pair 1.21
Mean z-score -2.37
Structure conservation index 0.55
SVM decision value 0.39
SVM RNA-class probability 0.715641
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5881389 112 - 22407834
GCCGAAUUACCAGGGCAGAACUCGAAAGAUUUCUGUUUGUGUUUGGAAGAUUGUUGCAAAACAUUGUUUCAUAUUAAAUAUGAUAUGCUUUUGUUUUCAAUUCCGUGGCAUA
(((((((.....((((((((.((....)).))))))))..))))(((..((((..(((((((((....((((((...)))))).))).))))))...)))))))..)))... ( -31.10)
>DroSec_CAF1 71343 112 - 1
GCCGAAUUACCAGGGCAGAACUUGCAAGAUUUCUGUUUGUGUUUGGAAGAUGGUUGCAAAACAUUGUUUCAUAUUAAAUAUGAUGUGCUUUUGUUUUCAUUUCCAUGUCACU
............((((((((.((....)).))))))))(((..((((.(((((..(((((((((....((((((...)))))).))).))))))..)))))))))...))). ( -27.70)
>DroSim_CAF1 72170 112 - 1
GCCGAAUUACCGGGGCAGAACUCGCAAGAUUUCUGUUUGUGUUUGGAAGAUGGUUGCAAAACAUUGUUUCAUAUUAAAUAUGAUGUGCUUUUGUUUUCAUUUCCAUGUCACU
.(((......)))(((((((.((....)).))))))).(((..((((.(((((..(((((((((....((((((...)))))).))).))))))..)))))))))...))). ( -35.50)
>DroEre_CAF1 95182 111 - 1
GCCGAAUUACCAGGGCAGAACUCGGAGCGGUUCUAUAUGUGUUUGAAAAAU-AUUUUAAGACACUGCUUCAUACUUAAUAUGCCAUGCUGUUGCUUUCGACUCCAUGACCCU
...........((((........(((((((((((....(((((.....)))-))....))).)))))))).............((((..((((....))))..)))).)))) ( -25.00)
>DroYak_CAF1 96925 112 - 1
GCCGAAUUGCCAGGGCGGAACUCGAAAGAAUUCUGUUUGUGUUUGGAAAAUGAUUUGAAAACAUUGUUUCGCAUUUUAUAUGCAAUGCUUUUGUUUUCAUUUCCAUGCCACU
.((((((.....((((((((.((....)).))))))))..)))))).....((..((((((((..((...((((.....))))...))...))))))))..))......... ( -31.70)
>consensus
GCCGAAUUACCAGGGCAGAACUCGAAAGAUUUCUGUUUGUGUUUGGAAGAUGGUUGCAAAACAUUGUUUCAUAUUAAAUAUGAUAUGCUUUUGUUUUCAUUUCCAUGUCACU
.((((((.....((((((((.((....)).))))))))..))))))...((((....((((((..((.(((((.....)))))...))...)))))).....))))...... (-16.74 = -18.06 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:29 2006