Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,881,077 – 5,881,167 |
Length | 90 |
Max. P | 0.880700 |
Location | 5,881,077 – 5,881,167 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.52 |
Mean single sequence MFE | -25.95 |
Consensus MFE | -21.88 |
Energy contribution | -21.88 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -2.25 |
Structure conservation index | 0.84 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5881077 90 + 22407834 GUUAAAUAUUUGUGCAGCA---CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCAGCCCAG ..........((((.....---..((((.(((((....)))...))...))))(((((((((((....))))))))))).))))......... ( -25.70) >DroSec_CAF1 71033 90 + 1 GUUAAAUAUUUGUGCAGCA---CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG ..........((((.....---..((((.(((((....)))...))...))))(((((((((((....))))))))))).))))......... ( -25.70) >DroSim_CAF1 71861 90 + 1 GUUAAAUAUUUGUGCAGCA---CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG ..........((((.....---..((((.(((((....)))...))...))))(((((((((((....))))))))))).))))......... ( -25.70) >DroEre_CAF1 94922 89 + 1 GUUAAAUAUUUGUGGAGCA---CGGUGUGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCG-CCCAG ............(((.((.---.((((((..(((....)))............(((((((((((....))))))))))).)))))))-)))). ( -32.10) >DroWil_CAF1 141334 92 + 1 GUUAAAUAUUUGUUAAGAAUGA-GAAAUGGAAAUGAAAAUUGUAUCAUAGCACGCUUUUCACAUGAGCGUGUGAAAGGCACACAUAGACCCAU ......(((((.....))))).-...((((..((((........)))).....(((((((((((....)))))))))))..........)))) ( -19.70) >DroYak_CAF1 96628 90 + 1 GUUAAAUAUUUGUGUAGCA---CUGUGUGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG ..........(((((....---(((((....(((....)))....)))))...(((((((((((....))))))))))))))))......... ( -26.80) >consensus GUUAAAUAUUUGUGCAGCA___CUGUGCGGACAUGAAAAUGGUAUCAUAGCACGCUUUUCACACAGCCGUGUGAAAAGUACACACCGGCCCAG ..........((((..........((((....((((........)))).))))(((((((((((....))))))))))).))))......... (-21.88 = -21.88 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:28 2006