Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,872,690 – 5,872,782 |
Length | 92 |
Max. P | 0.925635 |
Location | 5,872,690 – 5,872,782 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 68.19 |
Mean single sequence MFE | -15.76 |
Consensus MFE | -9.00 |
Energy contribution | -8.92 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.20 |
Mean z-score | -1.78 |
Structure conservation index | 0.57 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5872690 92 - 22407834 AUCAAGAUGAUCUCUAUGAUCGUUUUGCCACUAUAAGCUUUUGGUAUGUCA-----UAUGAAAUCAGUUUGGUAUCA--UACAACUUCAAUUCGU-------UGCC ..((((((((((.....))))))))))........(((..((((...((..-----(((((.(((.....))).)))--))..)).))))...))-------)... ( -18.70) >DroSec_CAF1 62662 97 - 1 GUUAAGAUGAGCUCUAUGAUCGUUUUGCUACUAUCAGCUUUUGGUAUAUCAUAUCAUAUCAAAUCAGUUUGGUAUCA--UACAACUUGAAUACGA-------UACC ..((((((((.(.....).))))))))....((((....((((((((........))))))))((((.(((......--..))).))))....))-------)).. ( -14.80) >DroSim_CAF1 63516 85 - 1 AUUAAGAUGAUCUCUAUGAUCAUUUUGCUACAAUCAGCUUUUGGU------------AUCAAAUUAGUUUGUUAUCA--CACAACUUGAAUACGA-------UACC ...(((((((((.....)))))))))(((......)))....(((------------(((...((((.((((.....--.)))).))))....))-------)))) ( -18.30) >DroEre_CAF1 86706 95 - 1 -CCCAGAUGAUCUCGAUGAUCAUUUUGCUACUAUCAGCUUUUGGCAUAUCAU----------AUCAGUUUGCAAUCAGCUCUAACUUUAUUAGCACUCCAUUCACU -...((((((((.....))))))))(((((.((..((((....(((...(..----------....)..)))....)))).......)).)))))........... ( -16.10) >DroYak_CAF1 88027 90 - 1 -UCAAGAUGAUCUCUAUGAUCAUUUUGCUACUAUCAGCUUUUUAUAUACCAUAUCU--CCAUAUCAGUUUGAAA----------CUU--UUAACA-UCCAUUUACU -.((((((((((.....)))))))))).............................--................----------...--......-.......... ( -10.90) >consensus _UCAAGAUGAUCUCUAUGAUCAUUUUGCUACUAUCAGCUUUUGGUAUAUCAU_____AUCAAAUCAGUUUGGUAUCA__UACAACUUGAAUACGA_______UACC ..((((((((((.....))))))))))............................................................................... ( -9.00 = -8.92 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:27 2006