Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,868,951 – 5,869,082 |
Length | 131 |
Max. P | 0.961230 |
Location | 5,868,951 – 5,869,042 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -20.04 |
Consensus MFE | -12.36 |
Energy contribution | -13.64 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.05 |
Mean z-score | -2.33 |
Structure conservation index | 0.62 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5868951 91 + 22407834 CCCAGAAAGUCCUACAUUUCUUCCGCCACUCUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUCUUACUUCUGGGUGAGUUGUA (((((((.................((.....((((((......)))))).......))...((((......)))))))))))......... ( -17.90) >DroSec_CAF1 58731 91 + 1 CCCACAAAGUCCCACAUUCCAUCCGCCACUUUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUCUGGGUGAGUUGUA ...((((...((((..........((...((((((((......)))))))).....)).(((((((....))))))).))))....)))). ( -20.50) >DroSim_CAF1 59575 91 + 1 CCCACAGAGUCCUACAUUCCAUCCGCCACUUUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUCUGGGUGAGUUGUA ............((((...(((((((...((((((((......)))))))).....)).(((((((....)))))))..)))))...)))) ( -20.80) >DroEre_CAF1 82862 74 + 1 CC----------CACAA------CCCCACA-CUCCGCCAGCAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUUCGGGCGCGUUGUA ..----------.((((------((((...-...(((......)))..........(.((((((((....))))))))))))...))))). ( -16.40) >DroYak_CAF1 84102 82 + 1 CC---------UUACAUUUCUUCCGCCACUUUUUCGCCAGUAAGCGAAAAGUUUAGGCAAAGUGAUACAUAUUACUUUUGGGUGAAUUGUA ..---------.((((.(((.((((((..((((((((......))))))))....)))((((((((....)))))))).))).))).)))) ( -24.60) >consensus CCCA_A_AGUCCUACAUUCCAUCCGCCACUUUUUCGCCACUAAGCGAAAAAUUUAAGCAAAGUGAUACAUAUUACUUCUGGGUGAGUUGUA .......................((((..((((((((......))))))))........(((((((....)))))))...))))....... (-12.36 = -13.64 + 1.28)
Location | 5,868,951 – 5,869,042 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -15.30 |
Energy contribution | -15.46 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.28 |
Mean z-score | -2.54 |
Structure conservation index | 0.59 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5868951 91 - 22407834 UACAACUCACCCAGAAGUAAGAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAGAGUGGCGGAAGAAAUGUAGGACUUUCUGGG .........(((((((((...((((.((..((((((....(((((((((....)))))))))..)))))).)).))))...)).))))))) ( -29.40) >DroSec_CAF1 58731 91 - 1 UACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAUGGAAUGUGGGACUUUGUGGG .........(((((((((..(((((.(((.((((((....(((((((((....)))))))))..))))))))).)))))..))))).)))) ( -29.90) >DroSim_CAF1 59575 91 - 1 UACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAUGGAAUGUAGGACUCUGUGGG .........((((((.((..(((((.(((.((((((....(((((((((....)))))))))..))))))))).)))))..)))))).)). ( -29.40) >DroEre_CAF1 82862 74 - 1 UACAACGCGCCCGAAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUGCUGGCGGAG-UGUGGGG------UUGUG----------GG .....(((((((..((((((..((...))..)))))).....(((((((....)))))))-....)))------.))))----------.. ( -19.20) >DroYak_CAF1 84102 82 - 1 UACAAUUCACCCAAAAGUAAUAUGUAUCACUUUGCCUAAACUUUUCGCUUACUGGCGAAAAAGUGGCGGAAGAAAUGUAA---------GG ((((.(((..((.(((((.((....)).)))))(((...((((((((((....)))).)))))))))))..))).)))).---------.. ( -21.40) >consensus UACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAAGAAAUGUAGGACU_U_UGGG ((((..((..((.(((((..........)))))(((....(((((((((....)))))))))..)))))..))..))))............ (-15.30 = -15.46 + 0.16)
Location | 5,868,962 – 5,869,082 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -23.74 |
Energy contribution | -24.10 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.44 |
Structure conservation index | 0.78 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5868962 120 - 22407834 CGCAUGUUGUUAAAGGAUCCAUCUUCGACCUCAUCUAAUAUACAACUCACCCAGAAGUAAGAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAGAGUGGCGGAAGAAAUGUAG .((((.........(....).(((((((...(((((....(((..((.....))..))))))))..))....((((....(((((((((....)))))))))..))))))))).)))).. ( -25.60) >DroSec_CAF1 58742 120 - 1 CGCAUGUUGUUGAAGGAUCCAUCUUCGACCUCAUCUAAAAUACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAUGGAAUGUGG (((((...((((((((.....)))))))).((((((.................(((((.((....)).)))))(((....(((((((((....)))))))))..))))))))).))))). ( -31.60) >DroSim_CAF1 59586 120 - 1 CGCAUGUUGUUGAAGGAUCCAUCUUCGACCUCAUCUAAUAUACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAUGGAAUGUAG .(.(((..((((((((.....))))))))..)))).....((((..(((.((.(((((.((....)).)))))(((....(((((((((....)))))))))..))))).)))..)))). ( -30.90) >DroEre_CAF1 82864 112 - 1 CGGAUGUUGUUGAAGGAUCCAUCUUCGACCUCAUCUAAUAUACAACGCGCCCGAAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUGCUGGCGGAG-UGUGGGG------UUGUG- .(((((..((((((((.....))))))))..)))))....((((((...((((.((((((..((...))..)))))).....(((((((....)))))))-..)))))------)))))- ( -32.60) >DroYak_CAF1 84104 120 - 1 CGCAUGUUGUUGAAGGAUCCAUCUUCGACCUCAUCUAAUAUACAAUUCACCCAAAAGUAAUAUGUAUCACUUUGCCUAAACUUUUCGCUUACUGGCGAAAAAGUGGCGGAAGAAAUGUAA .(.(((..((((((((.....))))))))..)))).....((((.(((..((.(((((.((....)).)))))(((...((((((((((....)))).)))))))))))..))).)))). ( -30.80) >consensus CGCAUGUUGUUGAAGGAUCCAUCUUCGACCUCAUCUAAUAUACAACUCACCCAGAAGUAAUAUGUAUCACUUUGCUUAAAUUUUUCGCUUAGUGGCGAAAAAGUGGCGGAAGAAAUGUAG .(.(((..((((((((.....))))))))..)))).....((((..((..((.(((((..........)))))(((....(((((((((....)))))))))..)))))..))..)))). (-23.74 = -24.10 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:24 2006