Locus 217

Sequence ID 2L_DroMel_CAF1
Location 623,337 – 623,448
Length 111
Max. P 0.709797
window340

overview

Window 0

Location 623,337 – 623,448
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.75
Mean single sequence MFE -37.06
Consensus MFE -28.83
Energy contribution -28.95
Covariance contribution 0.12
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value 0.37
SVM RNA-class probability 0.709797
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 623337 111 + 22407834
UCAAUUACUCAUGCGAUGAGCGAAAGGAGCAUCGUCAUGGGCAGGGGUGUUCGGGGUAUUCUCGGGGUAUUCAGAGGAUCCA---------GGUGGGGAAUCGCAGAGGAGAAGGACCAG
.......(((((((((((..(....)...))))).))))))...((((.(((.(((((((.....))))))).))).)))).---------..(((....((........))....))). ( -32.40)
>DroSec_CAF1 12567 111 + 1
UCAAUUACUCAUGCGAUGAGCGAAAGGAGCAUCGUCGUGGGCAGGGGUGUUCGGGGUAUUCUCGGGGUAUUCAGAGGAUACA---------GGUGGGGAACCGCAGAGGAGAAGGACCGA
.......(((((((((((..(....)...))))).)))))).........((((....(((((...(((((.....))))).---------.((((....))))....)))))...)))) ( -37.80)
>DroSim_CAF1 12125 111 + 1
UCAAUUACUCAUGCGAUGAGCGAAAGGAGCAUCGUCGUGGGCAGGGGUGUUCGGGGUAUUCUCGGGGUAUUCAGAGGAUCCA---------GGUGGGGAACCGCAGAGGAGAAGGACCAG
.......(((((((((((..(....)...))))).))))))...((((.(((.(((((((.....))))))).))).)))).---------.((((....))))...((.......)).. ( -36.60)
>DroEre_CAF1 16202 118 + 1
UCAAUUACUCAUGCGAUGAGCGAAAGGAGCAUCGUCAGGGGCUGGGGUUUUCGGGGU--UCUCGGGGUAUCUAGAGGAUCAAGGGGAUCCAGGUGGGGAGCCGCAGAGGAGAAGGACCAG
.......(((.((((((((((.......)).)))))....(((.(((((..(..(((--((((.((....)).)))))))..)..))))).)))((....)))))...)))......... ( -39.90)
>DroYak_CAF1 15183 94 + 1
UCAAUUACUCAUGCGAUGAGCGAAAGGAGCAUCGUCAUGGGCUGGGGUUUUCGGGGC--UUUCGGAGUAUCCGGGGGGUCCAGGAG------------------------GAAGGACCAG
.......(((((((((((..(....)...))))).))))))((((..(((((.((((--(..(((.....)).)..)))))....)------------------------))))..)))) ( -38.60)
>consensus
UCAAUUACUCAUGCGAUGAGCGAAAGGAGCAUCGUCAUGGGCAGGGGUGUUCGGGGUAUUCUCGGGGUAUUCAGAGGAUCCA_________GGUGGGGAACCGCAGAGGAGAAGGACCAG
.......(((((((((((..(....)...))))).))))))...((((((((.(((....))).))))))))...((.(((...........((((....)))).........))))).. (-28.83 = -28.95 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:12 2006