Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,851,456 – 5,851,550 |
Length | 94 |
Max. P | 0.748784 |
Location | 5,851,456 – 5,851,550 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 86.35 |
Mean single sequence MFE | -35.95 |
Consensus MFE | -30.16 |
Energy contribution | -31.27 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.84 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5851456 94 + 22407834 GAAC-CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAG-- ....-.....(((...)))((((((((((.((.((..((((((......))))))...)).))(((((.....))))).....))))))))))..-- ( -37.80) >DroPse_CAF1 123710 86 + 1 --------UGUGC-UCUCAGGUGCUGUACAGCAAAAUUGCCAUCGCCCUGUGGCGCAGCUCCCGAGGACUGACACCGCAUGUGGUUCAGCAGCAA-- --------..(((-((((.((.(((((...(((....)))....(((....)))))))).)).)))(.((((.((((....))))))))))))).-- ( -31.40) >DroSec_CAF1 41454 94 + 1 GAAC-CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAG-- ....-.....(((...)))((((((((((.((.((..((((((......))))))...)).))(((((.....))))).....))))))))))..-- ( -37.80) >DroSim_CAF1 41482 96 + 1 GAAC-CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAGCA ....-..........(((.((((((((((.((.((..((((((......))))))...)).))(((((.....))))).....)))))))))).))) ( -39.70) >DroYak_CAF1 66454 96 + 1 GAACCCCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCACGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAGC- ................((.((((((((((.(((....((((((......))))))........(((((.....))))).))).)))))))))).))- ( -37.60) >DroPer_CAF1 123082 86 + 1 --------UGUGC-UCUCAGGUGCUGUACAGCAAAAUUGCCAUCGCCCUGUGGCGCAGCUCCCGAGGACUGACACCGCAUGUGGUUCAGCAGCAG-- --------..(((-((((.((.(((((...(((....)))....(((....)))))))).)).)))(.((((.((((....))))))))))))).-- ( -31.40) >consensus GAAC_CCAUUUGCAUUGCAGGUGCUGUACAGCAAAAUCGCCAUCGCCUUGUGGCGCAGUUCGCGCGGCCUCACGCCGCAUGUGGUGCAGCAUCAG__ ...................((((((((((.(((....((((((......))))))........(((((.....))))).))).)))))))))).... (-30.16 = -31.27 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:17 2006