Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,844,770 – 5,844,867 |
Length | 97 |
Max. P | 0.917274 |
Location | 5,844,770 – 5,844,867 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 73.73 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -12.09 |
Energy contribution | -12.82 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.23 |
Mean z-score | -1.62 |
Structure conservation index | 0.64 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5844770 97 + 22407834 UCUUCUUAUUUUUUUUUUGAC-UAG-UGCCUGUGUCGUGGCAUUGGCAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC ...............((((.(-(((-((((........))))))))))))...((((((((((((.((.((((......)))))).)))))))))))). ( -24.30) >DroPse_CAF1 113892 80 + 1 CC----------UUUUUAGAC-GCGUUGCGUGCGU----GUGUCUGCCGACAAAUGUUUUAAUUAUGCUCAUUAUUAAA----GCUUAAUUAAAAAGUC .(----------(((((((((-((((.....))))----))(((....)))....((((((((.((....)).))))))----))....)))))))).. ( -17.30) >DroSec_CAF1 34841 79 + 1 CCCUCCUUUUCUUUUUUUGAC-UAG-UG------------------CAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC ..(((((..((.......)).-.))-.)------------------.))....((((((((((((.((.((((......)))))).)))))))))))). ( -10.80) >DroSim_CAF1 34843 79 + 1 CCCUCCUUUUCUUUUUUUGAC-UAG-UG------------------CAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC ..(((((..((.......)).-.))-.)------------------.))....((((((((((((.((.((((......)))))).)))))))))))). ( -10.80) >DroEre_CAF1 58849 92 + 1 U------GUUCUUUUUUUGGCCAAG-UGCUUGUGUCGUGGCAUUGGCAGACAAAUGUUUUAAUUAUGUGCGCUAUUAAAGGCGGCUUAAUUAAAAUGUC .------............(((((.-((((........)))))))))......((((((((((((.((.((((......)))))).)))))))))))). ( -24.20) >DroYak_CAF1 59494 88 + 1 U---------CCUUUUUUGAC-UAC-UGCCUGUGUCGUGGCAUUGGCAGACAAAUGUUUUAAUUAUGUUCGCUAUUAAAGGCGGCUUAAUUAAAAUGUC .---------........(((-..(-((((.((((....)))).)))))......((((((((((.((.((((......)))))).))))))))))))) ( -26.80) >consensus CC______UUCUUUUUUUGAC_UAG_UGC_UGUGU____GCAUUGGCAGACAAAUGUUUUAAUUAUGUUCGUUAUUAAAGGCGGCUUAAUUAAAAUGUC ..........................((((.((((....)))).)))).....((((((((((((.((.((((......)))))).)))))))))))). (-12.09 = -12.82 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:16 2006