Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,844,570 – 5,844,692 |
Length | 122 |
Max. P | 0.633387 |
Location | 5,844,570 – 5,844,668 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 73.92 |
Mean single sequence MFE | -15.77 |
Consensus MFE | -11.02 |
Energy contribution | -11.38 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.08 |
Mean z-score | -0.95 |
Structure conservation index | 0.70 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5844570 98 - 22407834 CGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUAUCAUAACAUACCCCCCCUCCC-ACAACC-AUGCCCCCUUCUCCUACGUUUCCAUCUUUGAUUA .....(((((((((((((....)))..)))))))))).....................-......-.................................. ( -13.00) >DroSec_CAF1 34649 90 - 1 CGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUAUCAUAU---ACCC-----CCC-UCAACC-CUGAUCCCUUCUCCACCGUUUACAUCUUUGAUUA .....(((((((((((((....)))..))))))))))......---....-----...-......-.................................. ( -13.00) >DroSim_CAF1 34649 92 - 1 CGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUAUCAUAUCU-CCCC-----CCC-UCAACC-CUGCUCCCUUCUCCACCGUUUGCAUCUUUGAUUA .....(((((((((((((....)))..))))))))))........-....-----...-((((..-.(((.................)))...))))... ( -15.63) >DroEre_CAF1 58645 100 - 1 CGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUAUCAUAACAUUCACCCCCUCCCCCCAGUCACUCCUCCCUGCUCCUCCGCCUGCAUCUUUGAUUA .....(((((((((((((....)))..))))))))))........................(((((.........((......)).........))))). ( -15.57) >DroYak_CAF1 59293 87 - 1 CGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUAUCAUAACAUUCAGCACCU-------------CCUCCCUGCUCCUCCGUUUGCAUCUUUGAUUA .((..(((((((((((((....)))..))))))))))...........((((...-------------......)))).........))........... ( -16.30) >DroPer_CAF1 112996 82 - 1 CGCUUUGUUGCUAAUUACGCAAGUGCAGUCG-CAGGACC---------------UCUC-GCG-UCCUGCCGCGCCACUCUUCAAAUUGCCGCUUUGAUUA .((......))....(((....))).(((((-(((((((---------------....-).)-)))))).(((.((..........)).)))...)))). ( -21.10) >consensus CGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUAUCAUAACA_ACCC____UCCC_UCAACC_CUCCUCCCUUCUCCUCCGUUUGCAUCUUUGAUUA .....(((((((((((((....)))..))))))))))............................................................... (-11.02 = -11.38 + 0.36)
Location | 5,844,596 – 5,844,692 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 74.35 |
Mean single sequence MFE | -14.10 |
Consensus MFE | -9.66 |
Energy contribution | -9.92 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -0.95 |
Structure conservation index | 0.69 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5844596 96 - 22407834 ---CUU---UGCUAUUUUUAAUAUGCACAACGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUA--U----CAUAACAUACCCCCCCUCCC-ACAACC-AUGCCCCC ---...---.((............((.....))..(((((((((((((....)))..))))))))))--.----....................-......-..)).... ( -14.30) >DroSec_CAF1 34675 88 - 1 ---CUU---UGCUAUUUUUAAUAUGCACAACGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUA--U----CAUAU---ACCC-----CCC-UCAACC-CUGAUCCC ---...---((((((.....))).)))........(((((((((((((....)))..))))))))))--.----.....---....-----...-......-........ ( -14.10) >DroSim_CAF1 34675 90 - 1 ---CUU---UGCUAUUUUUAAUAUGCACAACGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUA--U----CAUAUCU-CCCC-----CCC-UCAACC-CUGCUCCC ---...---.((............((.....))..(((((((((((((....)))..))))))))))--.----.......-....-----...-......-..)).... ( -14.70) >DroEre_CAF1 58671 98 - 1 ---CUU---UGCGAUUUUUAAUAUGCACAACGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUA--U----CAUAACAUUCACCCCCUCCCCCCAGUCACUCCUCCC ---...---...((((........((.....))..(((((((((((((....)))..))))))))))--.----.......................))))......... ( -15.20) >DroWil_CAF1 83176 96 - 1 GAUUUUUGCUACUAUUUUUAAUAUGCACUACGUUUCGUUGCUAAUUACGCGAAUGCAGUUGCCUUUGCUCCUCUAAUGUCU-CCCU-----C--------UCUCUCUCUC (((...............((((..(((..(((...))))))..)))).(((((.((....)).))))).........))).-....-----.--------.......... ( -9.10) >DroYak_CAF1 59319 85 - 1 ---CUU---UGCUAUUUUUAAUAUGCACAACGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUA--U----CAUAACAUUCAGCACCU-------------CCUCCC ---...---((((...........((.....))..(((((((((((((....)))..))))))))))--.----..........))))...-------------...... ( -17.20) >consensus ___CUU___UGCUAUUUUUAAUAUGCACAACGCUUUGUUGCUAAUUACGCGAGUGCAGUUGGCAAUA__U____CAUAACA_ACCC_____CCC__CAACC_CUGCUCCC ........................((.....))..(((((((((((((....)))..))))))))))........................................... ( -9.66 = -9.92 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:15 2006