| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,844,365 – 5,844,459 |
| Length | 94 |
| Max. P | 0.862510 |
| Location | 5,844,365 – 5,844,459 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 68.51 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -8.52 |
| Energy contribution | -8.47 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5844365 94 + 22407834 GAU-------UCCGUGGAUUAUCCCAAAAGAUUUUCAUGGAUUUC-UUUAAAAU--UAUGCAUGCAUGAUACCCUCUAAAGCGCCUAUAAAU----AUGGGUGCAUAA ((.-------((((((((..(((......))).))))))))..))-......((--((((....))))))..........((((((((....----)))))))).... ( -26.20) >DroSec_CAF1 34440 96 + 1 GAU-------ACCGCGGAUUAUCCCAACAGAUAUUCAUGAAUUUC-UUUAAAAUGCUAUGCAAGCAUGAUACCCCUUAAAGCGCCUAUAAAU----AUGGGCGCAUAA ...-------.....((..((((.....(((.(((....))).))-).....(((((.....)))))))))..)).....((((((((....----)))))))).... ( -22.40) >DroSim_CAF1 34443 95 + 1 GAU-------ACCGUGGAUUAUCCCCACAGAUUUUCAUGGAU-UC-UUUAAAAUGCUAUGCAUGCAUGAUACCCCUUAAAGCGCCUAUAAAU----AUGGGCGCAUAA ...-------.(((((((..(((......))).)))))))..-..-......((((.......)))).............((((((((....----)))))))).... ( -25.70) >DroEre_CAF1 58453 81 + 1 GAU-------UCCUUUGACUACCCCAAUGGUCUU--------------UAAAGU--GAUGCAUGCGUGGUACCCCUUAAAGCGCCUAUAAAU----AUGGGCGCAUCA ...-------..((((((..(((.....)))..)--------------)))))(--(((((..((..((....)).....))((((((....----)))))))))))) ( -23.50) >DroYak_CAF1 59088 94 + 1 UCU-------UCCGUUGAUUAUCCCAAUGGAUUUUAGUGGAUUUC-CUUUAAAU--UAUGCAUGCAUGAUACCCCUUAAAGCGUCUGUAAGG----AUGGGCACAUAA ...-------(((((((.......))))))).....(((......-((((((((--((((....)))))).....))))))(((((....))----)))..))).... ( -19.70) >DroAna_CAF1 31750 104 + 1 AAUAUGUUACCCAGAGAACUAUGCACAUUUAUUUU-AUAGUUUCCGCUGCAAAU--UAUUCAUG-GUGUUCCAAUUUAAGGCACUUGUACAUGUACAUGGAUAAAUGA ...........(((.((((((((...........)-)))))))...)))....(--((((((((-(((((.........)))))).(((....))))))))))).... ( -16.00) >consensus GAU_______UCCGUGGAUUAUCCCAAUAGAUUUUCAUGGAUUUC_UUUAAAAU__UAUGCAUGCAUGAUACCCCUUAAAGCGCCUAUAAAU____AUGGGCGCAUAA ........................................................((((....))))............((((((((........)))))))).... ( -8.52 = -8.47 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:13 2006