Locus 2164

Sequence ID 2L_DroMel_CAF1
Location 5,826,368 – 5,826,473
Length 105
Max. P 0.999611
window3495

overview

Window 5

Location 5,826,368 – 5,826,473
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 93.29
Mean single sequence MFE -30.60
Consensus MFE -28.80
Energy contribution -29.24
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.18
Structure conservation index 0.94
SVM decision value 3.78
SVM RNA-class probability 0.999611
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5826368 105 - 22407834
AAACCUAAAUUAAACUUAAUUCGAUGUUGCUGUGGGUAUUUGAAUUUCGAGCAUCCUGUCGUCAACAGAAAGUGCCAGGAAAAAGGACCCGCAGCGCAAAAGAGG
...................(((..(((.(((((((((.(((...((((..((((.((((.....))))...))))..)))).))).))))))))))))...))). ( -29.00)
>DroSec_CAF1 25575 99 - 1
AGACCUAAAUU------AAUUCGAUGUUGCUGUGGGUAUUUGAAUUUCGAGCAUCCUGUCGUCGACAGAAAGUGGCAGGAAAAAGGACCCGGAGCGCAAAAGAGG
...........------..(((..(((.(((.(((((.((((.....))))..((((((((.(........)))))))))......))))).))))))...))). ( -27.30)
>DroSim_CAF1 24880 99 - 1
AGACCUAAAUU------AAUUCGAUGUUGCUGUGGGUAUUUGAAUUUCGAGCAUCCUGUCGUCGACAGAAAGUGGCAGGAAAAAGGACCCGCAGCGCAAAAGAGG
...........------..(((..(((.(((((((((.((((.....))))..((((((((.(........)))))))))......))))))))))))...))). ( -31.50)
>DroEre_CAF1 49561 99 - 1
AGACCCAAAUU------AAUUCGGUGCUGCUGUGGGUAUUUGAAUUUCGAGCAUCCUGUCGUCGACAGCAAGUGCCAGGACGAAGGACCCGCAGCGCAAAAGAGG
...........------..(((..(((.(((((((((.((((...(((..((((.(((((...)))))...))))..)))))))..))))))))))))...))). ( -34.40)
>DroYak_CAF1 50018 99 - 1
AGACCUAAAUU------AAUUCGAUGUUGCUGUGGGUAUUUGAAUUUCGAGCAUCCUGUCGUCAACAGAAAGUGGCAGGAAAAAGGACCCGCAGCGCAAAAGAGG
...........------..(((..(((.(((((((((.((((.....))))..((((((((.(........)))))))))......))))))))))))...))). ( -30.80)
>consensus
AGACCUAAAUU______AAUUCGAUGUUGCUGUGGGUAUUUGAAUUUCGAGCAUCCUGUCGUCGACAGAAAGUGGCAGGAAAAAGGACCCGCAGCGCAAAAGAGG
...................(((..(((.(((((((((.((((.....))))..((((((((.(........)))))))))......))))))))))))...))). (-28.80 = -29.24 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006