Locus 2163

Sequence ID 2L_DroMel_CAF1
Location 5,825,772 – 5,825,882
Length 110
Max. P 0.772293
window3494

overview

Window 4

Location 5,825,772 – 5,825,882
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 84.08
Mean single sequence MFE -22.75
Consensus MFE -12.61
Energy contribution -13.19
Covariance contribution 0.58
Combinations/Pair 1.08
Mean z-score -2.64
Structure conservation index 0.55
SVM decision value 0.53
SVM RNA-class probability 0.772293
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5825772 110 + 22407834
AUGGCAUUCCGCAGAGCAGAGCCAAAAGCUUCAGUGGAAACAUAAAAACUUUAUUCUAGACAGAAAAGAAAGUUUAAAGCCAUAAGCUCGUUUUACAGCCAGAAAUAAAC
.((((.....((...)).((((.....((((..(((....)))..(((((((.((((....))))...))))))).)))).....))))........))))......... ( -24.70)
>DroSec_CAF1 24767 105 + 1
AUGGCAUUCCGCAG-----AGCCAAAAGCUUCAGUGGAAACAUAAAAACUUUAUUCUAGACAGAAAAGAAAGUUUAAAGCCAUAAGCUCGCUUUACAGCCAUAGAUAAAC
(((((.....((.(-----(((.....((((..(((....)))..(((((((.((((....))))...))))))).)))).....))))))......)))))........ ( -25.40)
>DroSim_CAF1 24288 105 + 1
AUGGCAUUCCGCAG-----AGCCAAAAGCUUCAGUGGAAACAUAAAAACUUUAUUCUACACAGAAAAGAAAGUUUAAAGCCAUAAGCUCGCUUUACAGCCAUAUAUAAGC
(((((.....((.(-----(((.....((((..(((....)))..(((((((.((((....))))...))))))).)))).....))))))......)))))........ ( -25.40)
>DroEre_CAF1 49035 103 + 1
AUGGCUUUCCGCAG-----AGC--CAAGCUUGAGUUGAAACAUAAAAACUUUAUUCUAGUCCGAUGAGAUAGUUUAAAGCCAUAAGCUUGCUUUACAGCCAGAAACAAAC
.(((((....(.((-----(((--.(((((((.((....)).......(((((..(((.((......)))))..)))))...)))))))))))).))))))......... ( -22.00)
>DroYak_CAF1 49475 93 + 1
AUGGCC------A-----------AAAGCUUGAGCUGAAACAUAAAAACUUUAUUCUAGUCAGAAAAGAAAAUUUAAAACCAUAAGCUUGCUUUGCAGCCAGAAACAAAC
.((((.------.-----------(((((..(((((......((((...(((.((((....)))).)))...))))........))))))))))...))))......... ( -16.24)
>consensus
AUGGCAUUCCGCAG_____AGCCAAAAGCUUCAGUGGAAACAUAAAAACUUUAUUCUAGACAGAAAAGAAAGUUUAAAGCCAUAAGCUCGCUUUACAGCCAGAAAUAAAC
.((((.....((........))..(((((...(((..........(((((((.(((......)))...)))))))..........))).)))))...))))......... (-12.61 = -13.19 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006