Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,821,991 – 5,822,081 |
Length | 90 |
Max. P | 0.912781 |
Location | 5,821,991 – 5,822,081 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.84 |
Mean single sequence MFE | -21.10 |
Consensus MFE | -14.24 |
Energy contribution | -16.77 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.04 |
Mean z-score | -2.55 |
Structure conservation index | 0.67 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.912781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5821991 90 - 22407834 GAAGCCUUGGUGGCAAUAAAAUCCUAAUAAAUUAUUUUG-----------CCUCUUAUUCUAAGGCCAAGGAAACUAUUCUUUUGAAGCAAUAAAUUUAAG ((((((((((.(((((...(((........)))...)))-----------)).......)))))))..((....)).)))..(((((........))))). ( -16.50) >DroSec_CAF1 20953 98 - 1 GAAGCCCU---GGCAAUAAAAUCCUAAUAAAUUAUUUUGAGGCCACAAAGCCUCUUAUUCUAGGGAAAAGGAAACUAUUCUUUUGAAGCCAUAAAUUUAAG .......(---(((........................(((((......)))))...(((.((((((.((....)).)))))).))))))).......... ( -23.80) >DroSim_CAF1 20199 95 - 1 AAAGCCUUGGUGGCAAUAAAAUCCUAAUAAAUUAUUUUGAGGCCACAAAGCCUC------UAAGGAAAAGGAAACUAUUCUUUUGAAGCCAUAAAUUUAAG .........(((((........................(((((......)))))------.((((((.((....)).))))))....)))))......... ( -23.00) >consensus GAAGCCUUGGUGGCAAUAAAAUCCUAAUAAAUUAUUUUGAGGCCACAAAGCCUCUUAUUCUAAGGAAAAGGAAACUAUUCUUUUGAAGCCAUAAAUUUAAG ...(((.....))).............((((((.....(((((......)))))...(((.((((((.((....)).)))))).)))......)))))).. (-14.24 = -16.77 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:09 2006