Locus 2160

Sequence ID 2L_DroMel_CAF1
Location 5,816,961 – 5,817,051
Length 90
Max. P 0.660363
window3490

overview

Window 0

Location 5,816,961 – 5,817,051
Length 90
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 88.64
Mean single sequence MFE -22.33
Consensus MFE -18.17
Energy contribution -18.40
Covariance contribution 0.23
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.81
SVM decision value 0.27
SVM RNA-class probability 0.660363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5816961 90 - 22407834
AAAUGUUGCACUGCCUCCCGCCUGCUGCUGCUGC-UGCUACUUUUACUUCGCCGACCUGGCCGGGACAUAAGUCCCGGCUGCAACUCACCA
....(((((..............((.((....))-.))....................(((((((((....))))))))))))))...... ( -29.60)
>DroSec_CAF1 15978 91 - 1
AAAUGCUGCACUACCUCCCCACUGCUCCUGCUCCUUGCUUCUUUUACAUUGCCAACCUGGCCGGAACAUAAGUCCCGGCUCCAACUCACCA
.((((..(((............)))....((.....))........))))........((((((.((....)).))))))........... ( -13.40)
>DroSim_CAF1 15176 91 - 1
AAAUGCUGCACUACCUCCCCACUGCUCCUGCUCCUUGCUCCUUUUACAUCGCCGUCCGGGCCGGGACAUAAGUCCCGGCUCCAACUCACCA
....((.(((............)))....((.....))............)).((..((((((((((....))))))))))..))...... ( -24.00)
>consensus
AAAUGCUGCACUACCUCCCCACUGCUCCUGCUCCUUGCUACUUUUACAUCGCCGACCUGGCCGGGACAUAAGUCCCGGCUCCAACUCACCA
....((.(((............)))....((.....))............)).....((((((((((....)))))))))).......... (-18.17 = -18.40 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:08 2006