| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 622,614 – 622,848 |
| Length | 234 |
| Max. P | 0.999892 |
| Location | 622,614 – 622,728 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 93.43 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -18.24 |
| Energy contribution | -18.13 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 622614 114 + 22407834 UUUCGACAUUUGAUUGAGUUUUUUGAACUAACGAAUUUUUUCUUUAUUUCUUUUUUCCUUUAGUUUGCUGGUGCUGUUAGUCUUAUUCAAAAAAGGCUUGAUCUUGGUGUGGUG ...(.(((((.(((..(((((((((((((((((((....)))........................((....)).)))))).....)))))))..)))..)))..))))).).. ( -23.30) >DroEre_CAF1 15458 107 + 1 UUUCGACAUUUGAUUGAGUUUUUUGAACUAACGAAUUUUUUCUUUAUUUCUUU-UUCCUUUAGUUUGUUGGAGCUGUUAGUCUUAUUCAAA-GAGGCUUGAUCUUG-----GUG ......((((.(((..(((((((((((((((((((....)))...........-((((...........))))..)))))).....)))))-)).)))..)))..)-----))) ( -21.50) >DroYak_CAF1 14429 107 + 1 UUUCGACAUUUGAUUGAGUUUUUUGAACUAACGAAUUUUUUCUUUAUUUCUUU-UUCCUUUAGUUUGUUGGAGCUGUUAGUCUUAUUCAAA-GAGGCUUGAUCUUA-----GUG ......((((.(((..(((((((((((((((((((....)))...........-((((...........))))..)))))).....)))))-)).)))..)))..)-----))) ( -21.60) >consensus UUUCGACAUUUGAUUGAGUUUUUUGAACUAACGAAUUUUUUCUUUAUUUCUUU_UUCCUUUAGUUUGUUGGAGCUGUUAGUCUUAUUCAAA_GAGGCUUGAUCUUG_____GUG ...........(((..(((((((((((((((((((....)))...............((((((....))))))..)))))).....))))..))))))..)))........... (-18.24 = -18.13 + -0.11)
| Location | 622,728 – 622,848 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.50 |
| Mean single sequence MFE | -43.84 |
| Consensus MFE | -43.96 |
| Energy contribution | -43.76 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.82 |
| Structure conservation index | 1.00 |
| SVM decision value | 4.41 |
| SVM RNA-class probability | 0.999892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 622728 120 + 22407834 UGUGUGUCGUCGUGAGUCUGUGGGCGUCUUGUAGCUCGCAUCCAUAUCUUGGAUAUUGCUCCUAAAGAGCGUUAAUUUGACACACAGUAACCCAGAUUAGCGAUCGGCGAUGACGCGAAA ..(((((((((((..(((.((((((........))))))(((((.....)))))...((((.....))))(((((((((.............))))))))))))..)))))))))))... ( -44.92) >DroSec_CAF1 11930 120 + 1 UGUGUGUCGUCGUGAGUCUGUGGGCGUCUUGUAGCUCGCAUCCAUAUCUUGGAUAUUGCUCCUAAAGAGCGUUAAUUUGACACACAGUAACCCAGAUUAGCGAUCGGCGAUGACGCGAAA ..(((((((((((..(((.((((((........))))))(((((.....)))))...((((.....))))(((((((((.............))))))))))))..)))))))))))... ( -44.92) >DroSim_CAF1 11491 120 + 1 UGUGUGUCGUCGUGAGUCUGUGGGCGUCUUGUAGCUCGCAUCCAUAUCUUGGAUAUUGCUCCUAAAGAGCGUUAAUUUGACACACAGUAACCCAGAUUAGCGAUCGGCGAUGACGCGAAA ..(((((((((((..(((.((((((........))))))(((((.....)))))...((((.....))))(((((((((.............))))))))))))..)))))))))))... ( -44.92) >DroEre_CAF1 15565 120 + 1 UGUGUGUCGUCGUGAGUCUGUGGGCGUCUUGUAGCUCGCAUCCAUAUCUUGGAUAUUGCUCCUAAAGAGCGUUAAUUUGACACACAGUAACCCAGAUUAGCGAUCGACGAUGACGCGAAG ..(((((((((((..(((.((((((........))))))(((((.....)))))...((((.....))))(((((((((.............))))))))))))..)))))))))))... ( -44.62) >DroYak_CAF1 14536 120 + 1 UGUGUGUCGUCGUGAGUCUGUGGGCGUCUUGUAGCUCGCAUCCAUAUCUUGGGUAUUGCUCCUAAAGAGCGUUAAUUUGACACACAGUAACCCAGAUUAGCGAUCGACGAUGCCGCGAAA .(((((((((((((((.(((..((...))..))))))))(((((.....)))))...((((.....))))(((((((((.............)))))))))....))))))).))).... ( -39.82) >consensus UGUGUGUCGUCGUGAGUCUGUGGGCGUCUUGUAGCUCGCAUCCAUAUCUUGGAUAUUGCUCCUAAAGAGCGUUAAUUUGACACACAGUAACCCAGAUUAGCGAUCGGCGAUGACGCGAAA ..(((((((((((..(((.((((((........))))))(((((.....)))))...((((.....))))(((((((((.............))))))))))))..)))))))))))... (-43.96 = -43.76 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:11 2006